Protein Info for DvMF_1164 in Desulfovibrio vulgaris Miyazaki F

Annotation: inner-membrane translocator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 50 (18 residues), see Phobius details amino acids 62 to 81 (20 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 173 to 191 (19 residues), see Phobius details amino acids 225 to 245 (21 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 293 to 311 (19 residues), see Phobius details amino acids 317 to 333 (17 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 309 (278 residues), 118 bits, see alignment E=2.2e-38

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to dvm:DvMF_1164)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKF6 at UniProt or InterPro

Protein Sequence (358 amino acids)

>DvMF_1164 inner-membrane translocator (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MQKYTLNAALAALCLGLVLLAQFNVIDQYTQTVLMFMGINIIFASSLNIVNGYMGEFSCG
HAGFMCVGAYASSVLSVVLFTSNKLVGDALLPPELAPMLFPVVLIVAGLVSSVFGLLVAL
PSFRTRGDYLAIITIAANYIVISVIENLDIIGGPRGFHGMKRVINGMRDLVDIPWMFIWV
ILGTLFSVWILRRLVNSTYGKGISAVCQDEVAAEIMSVDTNHVKLVAFMVSSGLAGVAGA
LYAHVYGYVNPQAFNILKSTEGLVMVYLGGMASLSGSVMAAILFTLLLESLRFVIPGLDA
ALHAVNLLPAGYELSQVWKWVLIPLILILLMQFRPEGIMGNRELSGVFPKLRRFYTFK