Protein Info for DvMF_1157 in Desulfovibrio vulgaris Miyazaki F

Annotation: putative PAS/PAC sensor protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details PF00989: PAS" amino acids 401 to 507 (107 residues), 27.6 bits, see alignment E=6.4e-10 TIGR00229: PAS domain S-box protein" amino acids 406 to 516 (111 residues), 38.5 bits, see alignment E=5.6e-14 PF13426: PAS_9" amino acids 409 to 509 (101 residues), 31 bits, see alignment E=6.3e-11 PF08448: PAS_4" amino acids 409 to 511 (103 residues), 63.8 bits, see alignment E=4.1e-21 PF13487: HD_5" amino acids 527 to 691 (165 residues), 140.6 bits, see alignment E=1.2e-44 PF01966: HD" amino acids 540 to 661 (122 residues), 29.7 bits, see alignment E=1.8e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1157)

Predicted SEED Role

"HD domain/sensory box protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKE9 at UniProt or InterPro

Protein Sequence (723 amino acids)

>DvMF_1157 putative PAS/PAC sensor protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MAENSASTGTPDRDRPAGRSRLLWFGIVVLGVTVAAATVGAYWNISDARHKLETDIAQRQ
AVLTLARVESVNLWLESMTEQGARLINADLFRLFASEVNQLEGDVGLLLNKPGQGADQGA
GSARPGKNGGKPGADAGDDDISQLAAQLPLMRNLLREFVTYSDFVSGRIVNTRAQTYIST
DATPVPLGEDQQGAIRAVLETGRMRFSHARSTQTGLVLDLFMPILPPQFEAATGARPVAV
LMLSKIISGKVGEFLAASPLVEKGQVSRLVQRTPRGFEEIAPSAQEGLKNVSPPAFAETG
DLPFMLRASVDGGTQVYSTGRKVPNLEWWTVEEIPADLALARLAERERTVVGLAVLCTLL
LVVMLASLWWWLVGREQREIARDFKALFEVIDDQKQLLDGINSAMTHPVSLTDDQSVFQY
VNRAFARAVGRSPEELLGMDMQAVFGFDTARRITAPDAQVLMGGDPATVNEVVYLQSRKR
HFQIVKAPLFGPDGRQVRGVVSVFHDITDLVEAQERNRRVVQQTIDALVRAIEQTDPYLA
GHSRLMGIAASLTARAMGLGERDVATVEAAANLSQVGKMFVPRDILNKPGKLTAQEKQEM
ERHVEYARDVLSSIEFDLPVLPAIIQMNERQDGKGYPEGLSGEQISAHARILAVTNAFCA
MLRPRSYRPALPLEKVLDALESQTDSYDVSVVHALRDVLDTPAGERLLGQFGGTAAGGGN
GEA