Protein Info for DvMF_1051 in Desulfovibrio vulgaris Miyazaki F

Annotation: TPR repeat-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 21 to 45 (25 residues), see Phobius details PF13432: TPR_16" amino acids 83 to 127 (45 residues), 18.6 bits, see alignment 1.4e-06 amino acids 137 to 195 (59 residues), 28.7 bits, see alignment E=1e-09 PF07719: TPR_2" amino acids 94 to 126 (33 residues), 25.7 bits, see alignment 5.2e-09 PF00515: TPR_1" amino acids 94 to 126 (33 residues), 31.3 bits, see alignment 8.1e-11 PF13424: TPR_12" amino acids 94 to 156 (63 residues), 34.1 bits, see alignment E=1.7e-11 PF13181: TPR_8" amino acids 94 to 126 (33 residues), 26.9 bits, see alignment 2.3e-09 amino acids 129 to 160 (32 residues), 14.8 bits, see alignment 1.7e-05 PF13428: TPR_14" amino acids 94 to 134 (41 residues), 23.6 bits, see alignment 4.1e-08 PF12895: ANAPC3" amino acids 107 to 184 (78 residues), 28.5 bits, see alignment E=1e-09 PF13431: TPR_17" amino acids 115 to 147 (33 residues), 26.9 bits, see alignment 2.4e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_1051)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmH" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPU9 at UniProt or InterPro

Protein Sequence (215 amino acids)

>DvMF_1051 TPR repeat-containing protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSQTNRAQGRQQQDGDYVRKSTMYMAVAVALVVGAFLGVQVTSLYSPAPAQEKRAVSAPS
QQSQNGPANQISPDVMGRILEMEQAVLKDPNDVAAWTKLGHLYFDTDQPKKAIPAYEKSL
ALKPNDPDVLTDLGVMYREDHQHDRALATFEKAIAANPKHQIARFNKGIVLYFDLERKDD
ALKAWRELLAINPDAKAPNGQPLKEMMQSLQQQSK