Protein Info for DvMF_0846 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 782 transmembrane" amino acids 47 to 75 (29 residues), see Phobius details amino acids 122 to 142 (21 residues), see Phobius details amino acids 148 to 180 (33 residues), see Phobius details amino acids 192 to 210 (19 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 288 to 308 (21 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 359 to 381 (23 residues), see Phobius details amino acids 432 to 465 (34 residues), see Phobius details amino acids 471 to 495 (25 residues), see Phobius details amino acids 503 to 527 (25 residues), see Phobius details PF02516: STT3" amino acids 133 to 200 (68 residues), 44.2 bits, see alignment E=1.9e-15 PF21436: STT3-PglB_core" amino acids 551 to 669 (119 residues), 52.3 bits, see alignment E=8.3e-18

Best Hits

KEGG orthology group: K07151, dolichyl-diphosphooligosaccharide--protein glycosyltransferase [EC: 2.4.1.119] (inferred from 100% identity to dvm:DvMF_0846)

Predicted SEED Role

"Oligosaccharyltransferase PglB (EC 2.4.1.119)" in subsystem N-linked Glycosylation in Bacteria (EC 2.4.1.119)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.1.119

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNX0 at UniProt or InterPro

Protein Sequence (782 amino acids)

>DvMF_0846 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSVHTPETSPLASSSAGHPEAGSNGESHTLPDGRQPPPARRSPRAVLRAAAVALCSPGGR
AVLLALLAFGVAFAMRMLEYPAWQTPEYQLDGEYLLATHDAYHWTAGADGFEFGAGHPMS
ELVRYVALLTGSTSGAVGFWLPPVMGSLLAVAVFAWAAALGGMEAGLCAGVLASLAPGFL
ARTLLGYCDTDLVTLLFALVAALGPGLWLAPRLRTLPEMAVALYRRLRRGSKRASTASGT
TADGADGGADGATDGTSGVDDALAPHWMAVLLCSGLLGWWSQEWHSMFPYLVRYYALLVP
GLAVVFGRRGGRADLMVGGLLYALPMLGGWPGFAGAVLLAVGLRGPWPFLRALAERRVVH
AALWLVVLWLVADAEVFQTMLNSAQSYIKRAGDAVAQADGDVLVYPSVAQSIIEVQDLSV
AEVLAYFHPWMPAALAGLAGFGIALVARPAALFHLPLAVLAFLSIKLGGRMVMFGAPVMA
LGICMPVHWLAGLVLRDNFYRTAGRLLVSAVLLVVLGAPYLEVIPAMTQGPILNRRHAAA
LKFLRTNTPEEAMIWNWWDWGYSTHHFAHRSTIADGASHGGPSLFVPAAVYASDNPRFAR
QLIKYAASKGNIPGNVFEGMNNHDADDLMRKLAARKEPLVAAQGRQYLVVSFDMLRLGFW
ITTYGRWNFLAKEGRGYQIASISKPLQFSMENGVVLVQNMDPVYAESIDVFDDTGLQRQM
YFRFNGRHFIFNRTTGDKLVIDDDMYNTLMVQLLLSSPEDPRFTPYFKLVFDNVHTRVYE
VL