Protein Info for DvMF_0789 in Desulfovibrio vulgaris Miyazaki F

Annotation: Non-specific serine/threonine protein kinase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1069 PF08455: SNF2_assoc" amino acids 210 to 593 (384 residues), 129.8 bits, see alignment E=2.4e-41 PF04851: ResIII" amino acids 606 to 761 (156 residues), 38.7 bits, see alignment E=2e-13 PF00176: SNF2-rel_dom" amino acids 610 to 888 (279 residues), 251.6 bits, see alignment E=1.8e-78 PF00271: Helicase_C" amino acids 904 to 1014 (111 residues), 80 bits, see alignment E=3.1e-26

Best Hits

KEGG orthology group: K08282, non-specific serine/threonine protein kinase [EC: 2.7.11.1] (inferred from 100% identity to dvm:DvMF_0789)

Predicted SEED Role

"SNF2/helicase domain protein"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.11.1

Use Curated BLAST to search for 2.7.11.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DL43 at UniProt or InterPro

Protein Sequence (1069 amino acids)

>DvMF_0789 Non-specific serine/threonine protein kinase (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MELNEEQSVRSLLQDFVHDSIPEYILDGSQDILAEGGVQKLSLKKADGYWEVEGSIQGED
FQIYSPKLSISLGEGTTAYHCNCPDSFSGVCRHVGATALKMLSSLETRSGGEEPARPKTE
WRQNFRAFFSTAIEPEAGQHYLIFRFHPEPGRLLVSLFRGRQNKSGLSTVHNEITLEQIL
RNPDWCELSPQLAQVSQQIGQIVDYYGHRIEVPDGLLTWFLWAIRNEYYLFWGDTDQPCR
IERTSMRLKLKPQLTDDGLSFDVMLHREGKQPFSIIGSEVTFHGQMPLWVCWNKGFYPVH
TSLNSQLVQDLVRQPPMIPQEDISEFLDRVWTKLPTSDLYGQEEFLKHMEPIFQPATYNP
KLFLDEEGSLLTLEIQNIYETVHGEFYLPGPNPDFQTGSYTIDGHTCLIRRHQEEEASLT
ALLAEMRFQPRSNRMWFLEPEEAINFLLDAYPKLVELYRVYGEKALSRYKVRLSQPVITA
KVETSEEDKWFSLDITVEYDGQKVPIDKIWKAWAQGKRYVQLKDGSYTSLPEAWLKRIAH
KLQALGLDPEKPPQKQFQQFEAPVLDSLLDDLPDAQTDPFWNSLRDKIRNFREIRPIDPP
KGLTASLRGYQQQGLSYLNFLREYGFGGILADEMGLGKTIQTLSFIQHMVERGAVGPNLI
VVPTSVLPNWDREAQKFVPDLRRLIIYGTRREGMFRRIDESDLVVTTYALLRRDLEELQE
HEFNSIILDEAQNIKNPNTITARSVRRINARMRLCLSGTPIENNLFELWSLFEFLMPGFL
GSQHAFQRGIIKPIKDGDSETLDYLRTRVRPFILRRTKSEVAKDLPPKIENTYYCALAEE
QAELYAALARKLKEQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNL
PSGKFDAFKDMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINAIPFCYLDGTSKDRFDQV
DRFNNTPEIPIFLISLKAGGTGLNLTSADYVIHYDPWWNPAVESQATDRTHRIGQTRQVF
SYKLICENTVEEKILKLQDMKRGVAEAIIPGQEAWKSLTREDLEMLFEV