Protein Info for DvMF_0764 in Desulfovibrio vulgaris Miyazaki F

Annotation: UvrD/REP helicase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1161 PF00580: UvrD-helicase" amino acids 7 to 451 (445 residues), 110 bits, see alignment E=4.4e-35 PF13361: UvrD_C" amino acids 729 to 857 (129 residues), 35.6 bits, see alignment E=1.9e-12 PF12705: PDDEXK_1" amino acids 986 to 1135 (150 residues), 25.5 bits, see alignment E=3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0764)

Predicted SEED Role

"FIG003033: Helicase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DL18 at UniProt or InterPro

Protein Sequence (1161 amino acids)

>DvMF_0764 UvrD/REP helicase (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MPTPTLTQIKASAGSGKTYTLTRRFLSLLAGARDEDGRACSLAVEGGHCWPDILAVTFTN
KAASEMKERVIRLLKEHALADPAQARKDGGDGAWPPARAARWVDIILRRYGALNIRTIDS
LLTMLVRLAALELSLPPDFEPSFSPDEYFEPLYDLILDRARRGDAQLRDDVRDACRLLLF
HTDLKGFTVGAGLRVRLSQLLQLHLAEGGMSGPDPLNAGPAPFDADAPRGGLPDVDTDAL
AAKLVAIHADMQDATATLSRILAEEQLSAAANLHKFLDKCAENSAFSPLSKSAYLEKGGL
DDCLLKASKGKGSDDARAAFDAWRDACNDFAVRGRLIQRALQVAPLAGLARAMATHLPDF
QRREGKLPQPLIPLHARDVLNGEFGVSEAFCRMGTRLAHVLIDEFQDTSRDQWAAIEPLA
VECLSRGGGLTWVGDVKQAIYGWRGGDSALFDDILASPALTAIVPDPQRETLPRNWRSRA
AIVRHNNTVFAQLDDPLRARGVLSAMLGDKTPDHVLDEAAASVARAFAGAAQEVPDRDSA
QGGLVRIVPVHGEDNGDLRDKVRQQLRALFMDDLAARRPWRDVAVLVRKNDESAQVASWL
MDWGVPVVTENSLRLADHPLVTQTVALLAFLDYPPNALALWEVLTGVELFGGISGLSDHA
LRDWLADRCARPADDPRGGKGLLADFRATFPVAWETWLAPFYARAGLMGPYDTVREIFER
FRVAQRHPEDIGYVRRFLEVVHNAESRGLTSLATFLEFWVESGGEEKVPMPEAMDAVRVM
TMHKSKGLEFPVVVIPFHHQPDRTDPPLVVAELDGQPLLAPLCPEMGDRYHHAQAAAAAE
KLHLLYVGWTRPVDELHAYVTSTPFAERSSSLLAGVRALLTGCAIDTGQEYVAGVVPPAR
ATDAHAGSDTEDTREAPRDEAAAQAAPPDAPQAVPAPLPSPARAPAPGPLPGHAAAHAPD
LPSPAAPWRPMQWLPRLKIFRNQLEEFTFTERRRGMLVHACLEQLRLTGTPDQDAARAVA
HGMRAFPLPVPDPEATANELTAMLAWLAALPQAAHWFTHGVPEQSIMDAQGSIHRTDLMV
DDGETCTVVEWKTGRPSDDHVAQVRRYLGLLAEATGRGPAGVRGVLVYLDGRTVRPVALR
TADAAPQNDAPQNDANEGHRP