Protein Info for DvMF_0746 in Desulfovibrio vulgaris Miyazaki F

Annotation: phage baseplate assembly protein V (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 TIGR01644: phage baseplate assembly protein V" amino acids 15 to 205 (191 residues), 100.2 bits, see alignment E=5.4e-33 PF06890: Phage_Mu_Gp45" amino acids 20 to 86 (67 residues), 81.5 bits, see alignment E=3.6e-27 PF18946: Apex" amino acids 187 to 204 (18 residues), 24.2 bits, see alignment (E = 2.7e-09)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0746)

Predicted SEED Role

"Prophage baseplate assembly protein V"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DL00 at UniProt or InterPro

Protein Sequence (208 amino acids)

>DvMF_0746 phage baseplate assembly protein V (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MQRVQTMINRTLATVRQAFRARLTGLDSKPGVQLVQAAALAGEQVQAAELFQHFGFTSAP
PAGTQCILLPLGGKTAHSVVVATENGAFRVQALQGGEVCVYNQWGAKITLKKEKIVEVDC
DHFRVAAKESIQMDTKQWQATASAGTTFTSPSLAFGGMDGTRARATLDANLNTTGDVTSE
GDHVAGGISLRRHRHPGDSGGTTGEAEG