Protein Info for DvMF_0688 in Desulfovibrio vulgaris Miyazaki F

Annotation: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details TIGR03007: polysaccharide chain length determinant protein, PEP-CTERM locus subfamily" amino acids 2 to 457 (456 residues), 473.6 bits, see alignment E=2.7e-146 PF13807: GNVR" amino acids 318 to 396 (79 residues), 36.5 bits, see alignment E=1.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0688)

Predicted SEED Role

"Lipopolysaccharide biosynthesis chain length determinant protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DK49 at UniProt or InterPro

Protein Sequence (480 amino acids)

>DvMF_0688 polysaccharide chain length determinant protein, PEP-CTERM locus subfamily (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKRYLVLVNESVVSFCVVAVLVAVLGVVVSYVLPKRYQAQSSVSIEENVVNELVKGIAVT
PSLEAKLRILKVSILSRKMLLRVIKDLDMDLGIQGERLERLIETTRSNVEITHEERKGIF
YIRYANSSPERARDFVNALTRRYIEESTSSKREESYEATRFLFDQISVFQKRIDAAQQAI
DAYKSEKGMVLSLNENILREEIKETEHRLEETRIRKNERLAQLNILEKGSGGGRLAEKEA
SYKTLLRTYTDQHPDVIKARAELDALRSGGDGAERRKGGVDYQRLKVELESLSEIEQVQQ
ALIEKDKRLLQELPAVQTELQVLQQARKNETLIYEQLVSRYGQSEVSKQMELQDKAVSFR
IIDPAILPLRPSSPNRPLIMLGSLVAGVVVAAGGIILSDQFFRRVRSVEDLTSRGFLVLG
ALPRIATAADARVARRRRTAIALALLAMLCIVGLAGWEYSGFEGLDTLFARARYILSTWL