Protein Info for DvMF_0510 in Desulfovibrio vulgaris Miyazaki F

Annotation: C_GCAxxG_C_C family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 PF09719: C_GCAxxG_C_C" amino acids 18 to 131 (114 residues), 76.3 bits, see alignment E=1.1e-25 TIGR01909: C_GCAxxG_C_C family protein" amino acids 18 to 128 (111 residues), 63.9 bits, see alignment E=7.1e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0510)

Predicted SEED Role

"C_GCAxxG_C_C family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKN8 at UniProt or InterPro

Protein Sequence (164 amino acids)

>DvMF_0510 C_GCAxxG_C_C family protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKADATREQAQATFEAGFNCAEAVFLVATREFGLDVPEQVRLATAFGGGVGRCKEEMCGA
VAGAVLAVGALCGRERPGADWDLAARLARTVREDALAAHGSIRCGDLLHAFGEQQGMQAC
IRFTAMVAGQVVARLRQARDDGEFVPPAAMRSEAGGVLARQVLR