Protein Info for DvMF_0506 in Desulfovibrio vulgaris Miyazaki F

Annotation: PGAP1 family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details PF00561: Abhydrolase_1" amino acids 106 to 212 (107 residues), 32.9 bits, see alignment E=8.5e-12 PF12697: Abhydrolase_6" amino acids 108 to 329 (222 residues), 33.9 bits, see alignment E=7.8e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0506)

Predicted SEED Role

"Protein of unknown function DUF676, hydrolase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DKN4 at UniProt or InterPro

Protein Sequence (361 amino acids)

>DvMF_0506 PGAP1 family protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSLLLVPLCIALTIAVISYLLFFRAARRDTAPTPPASLVVRGVIHSVVGGTLALSLYPFG
PWFRRRCRPCPFPRRAAPEGRHRAEAPCAGSTDACSPRANLPQALPPVLLIHGLYHNVTA
WTLYRRWLNEAGFTRVYCHGYSSWHTGFGLLVDELDETMRDLLAAHPGEKPLLVGHSLGG
LLIRGWLADAANQQLVAGAVTLGTPHQGSTLARLGAGRLARSLTFRGALIRELEATEAPS
DVPCVALYSPIDNMVVPQEGLHVTTPGWTTRASPAVSHIWMLWDRATARLAIESLRELAD
RHTARERQRRACGDPASGQIASGHAASGHVMPDGTPCAATTPEQAAGSKNSEQENPGYSR
A