Protein Info for DvMF_0421 in Desulfovibrio vulgaris Miyazaki F

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 31 to 49 (19 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 172 to 188 (17 residues), see Phobius details

Best Hits

KEGG orthology group: K02795, PTS system, mannose-specific IIC component (inferred from 100% identity to dvm:DvMF_0421)

Predicted SEED Role

"FIG00603247: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJQ6 at UniProt or InterPro

Protein Sequence (189 amino acids)

>DvMF_0421 hypothetical protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTGEWGLSMHIAIFLELFWLDLFPAGTYIPPNSIISLLLALSVAGHFGLESAGQLAIPVL
LTLPAALAGAHVEYLHRRWRNQQYTDLLHWGRVAEHTGKGDSPLWRIMVRSLGELFALNL
GLFCVCLLVLVGTIELMSNYIGHLPAVPGIAWGHVWFVGAMGGMLALRLRRAYVAFALAL
LAASAASFI