Protein Info for DvMF_0375 in Desulfovibrio vulgaris Miyazaki F

Annotation: permease YjgP/YjgQ family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 78 (29 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 276 to 293 (18 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 333 to 354 (22 residues), see Phobius details PF03739: LptF_LptG" amino acids 6 to 350 (345 residues), 214.2 bits, see alignment E=1.5e-67

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0375)

Predicted SEED Role

"Predicted permease YjgP/YjgQ family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJL0 at UniProt or InterPro

Protein Sequence (361 amino acids)

>DvMF_0375 permease YjgP/YjgQ family protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MSLLARYLFRNNLMLILPTLAIGTGLYILSDLFDRLDDFLEAGVSLSVAAWYFVAKTPLI
ISQILPAVFLLATLSQLCLMSRGRELIALQAGGISMGRIARVLVLCGLVWGGLQLGFSQV
LGVSGEVEAARIWSEDVRGKTEATATLRNVWFTDGAYVVSLAEVVPAQGTGRGLAAYELS
DDGLSILRVVRAATFTAGQRQWELHGVTEFDPSGYLSTRHDSLTLPLRQDVQAFLITARN
ADPSRLPLWQLGDAIDRLSASGSNVEGVRTAWHMKLAYAASLVVMAAVAAAIVTWRDNIY
LGIGLSLIITFLFYTMFTVGGTLGQKGIVSPPLAAWGSNALILAVALLRLAWVLKPRFKA
D