Protein Info for DvMF_0356 in Desulfovibrio vulgaris Miyazaki F

Annotation: Tetratricopeptide TPR_4 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 PF13432: TPR_16" amino acids 36 to 77 (42 residues), 22.7 bits, see alignment 5.4e-08 amino acids 99 to 154 (56 residues), 22.6 bits, see alignment 5.5e-08 amino acids 167 to 227 (61 residues), 26.6 bits, see alignment E=3.2e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0356)

Predicted SEED Role

"Heat shock (predicted periplasmic) protein YciM, precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DJJ1 at UniProt or InterPro

Protein Sequence (402 amino acids)

>DvMF_0356 Tetratricopeptide TPR_4 (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTLLDRLKAGARSLLGNRRADILSPMGPDAESPGARDALSAIQELSRVVRNDPDAVEIYL
ALGNLYRLRGDIERAVQIRSSLIVRPGLDPQFKARALFELGRDYRRGGVMDRALAAFDEA
RALGADPEQITFELALLHADSGAFQEAAAQYARLGFRPAQAHYMVRHAEDLDRCGRPDEA
RTLLAKAVKVYPGAVEAWRARLVMAARAGEWRRAGKLLREGLERVPASIRFLLLEGLLEL
EAPAPRHGNGAVTPDGSGANGAHGTNGAHGTNGAGTADFEEKRCATVLAAIEAQEPDLLL
QYYGALFLLRCGNREEAGNWLAKAMVLRPDFWAARLELLSLSMEQQHLSPVFRSQLEYFI
EHARKVKRFVCGSCGLRREHTFSVCPRCRSWHSATFRMSLQD