Protein Info for DvMF_0300 in Desulfovibrio vulgaris Miyazaki F

Annotation: CgeB family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 PF12996: DUF3880" amino acids 140 to 217 (78 residues), 54.1 bits, see alignment E=1.4e-18 PF13524: Glyco_trans_1_2" amino acids 270 to 370 (101 residues), 98.7 bits, see alignment E=1.8e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0300)

Predicted SEED Role

"CgeB family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPH0 at UniProt or InterPro

Protein Sequence (448 amino acids)

>DvMF_0300 CgeB family protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MTQSFDTPPFPESSASGAPGAPGTPPNGVLRLRVLVVLPMYGGSLPIGRYCVDALRDLGH
VVETFEAPSFLGAFTALKDLKVTADRLEFLENSFLQVVSQAVLAKVETFGPDLVLCLAQA
PLNHQALKRLRRDNVATAMWFVEDHKVFTYWRAFAPFYDVFAVIQRAPLLDELAAMGVRD
ALYLPMAALPSFHKPLELSPVDQRRYGADVAFLGAGYPNRRVAFRQLVHLDFRIWGTEWD
GEPLLARHVQQGGARVSAEDSVKIYNASRINLNLHSSIQSRTMVTGGDFVNPRTFELASI
GAFQLVDRRTLMDELFAEDELATFDSMDGLTAAIAHYLAHPEERQAMAARARARVLAEHT
YQHRMRTLLEFIAQRRPGWPAPRAADAGLPADLPEDMRRELAALLDRLGLPADAAFADVI
TALRQHSGQLSPLETSLLFLDEWRRQYA