Protein Info for DvMF_0278 in Desulfovibrio vulgaris Miyazaki F

Annotation: CBS domain containing membrane protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF00571: CBS" amino acids 4 to 55 (52 residues), 58.9 bits, see alignment E=2.5e-20 amino acids 94 to 148 (55 residues), 58.1 bits, see alignment E=4.5e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0278)

Predicted SEED Role

"CBS domain protein sometimes clustered with YjeE" in subsystem YjeE

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPE8 at UniProt or InterPro

Protein Sequence (150 amino acids)

>DvMF_0278 CBS domain containing membrane protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MLLAKDIMTAAPVTVTPETGIAEAARIMIQRKFNGLPVVDGKGTLVGVICQSDLIAQHKK
LNLPTLFTVLDGFIPLRSMSDLDEEMRKISATNVGQAMTPDPVTVGPETPIDEVASLMVD
SKYHTLPVVDAGSLVGVIGKEDVLRTLAGA