Protein Info for DvMF_0235 in Desulfovibrio vulgaris Miyazaki F

Annotation: Lysine exporter protein (LYSE/YGGA) (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 74 to 91 (18 residues), see Phobius details amino acids 162 to 183 (22 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details PF01810: LysE" amino acids 14 to 138 (125 residues), 60.9 bits, see alignment E=6.2e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0235)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DPA5 at UniProt or InterPro

Protein Sequence (216 amino acids)

>DvMF_0235 Lysine exporter protein (LYSE/YGGA) (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MEFATLAAMSTYAIAMSVTPGPNNTMVMSSGLTFGFWRTMPHLMGISLGFPLMIISVGLG
MDRIFAAVPQLHDWLRWVGSAYLLWLSWRIATAAPPTPGEAAKGRNAARPMTFIEGALFQ
WVNPKAWLAAVAGVTTYVSGHGGSESPLAANVLGLHGVSPELLALTAVFAVMAFPSVAIW
CAGGTALRGLLHSPVAVRWCNVVMGALLAISVFSLF