Protein Info for DvMF_0210 in Desulfovibrio vulgaris Miyazaki F

Annotation: Extracellular ligand-binding receptor (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 187 to 407 (221 residues), 134.1 bits, see alignment E=1e-42 PF01094: ANF_receptor" amino acids 216 to 397 (182 residues), 45 bits, see alignment E=7.9e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0210)

Predicted SEED Role

"ABC-type branched-chain amino acid transport systems, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNW3 at UniProt or InterPro

Protein Sequence (592 amino acids)

>DvMF_0210 Extracellular ligand-binding receptor (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MCKAQAGLTYQQFCVAVTCTVLLLLAAWPDSAARAEREMAQGAFASGPTCGPTGNPIGPS
FTNPAHPAPSAPAPDFQNAEAGTGLAIPAAVPAAVRATASGGPSRIAATRTPGFPTGSLV
AQDSRAAGVPATAAAPFAYTGETVAPADVPSGVPSGSNQPRSAAVSPADAKPSADSPAGG
ELAPGEPVRLGMSAPFSGPGVSLGREFHRGAASCLARVNAAGGVHGRRVEIVAMDDGYDP
DRTVRNVIRLIEEERVFALFGLVGTPTVTRVLPLLGGHPERTVPLLFPFTGARPLSLPRH
EGLVFRLRASYDAEFSELVDRLHDAGCSRIAVFYQADAYGREGWADLRDALARRRLPLAA
EASYPRGSGSDADFTEQAGLILQGMPDAVVCVGTDATCAAFIRDLRDVPAARGAKRQAGQ
PSPQFSGKGGPAIPVAMPSFVDSRQLVDLLVAMGRSVRRDYTHDLVLTEVVSPWTGNLPA
AIDYRRDFAEMADVPDVLDIPGNDAAPPSAPGEVSFEGYLAARLLVRALERMGPHPSPAG
LHEALVGLDGYDLGVGQPYRYTPTEQGLGLVRFATVRGGVPVDLRDFSEWRR