Protein Info for DvMF_0208 in Desulfovibrio vulgaris Miyazaki F

Annotation: EAL domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 762 transmembrane" amino acids 58 to 79 (22 residues), see Phobius details amino acids 97 to 103 (7 residues), see Phobius details amino acids 105 to 130 (26 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 213 to 234 (22 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 321 to 341 (21 residues), see Phobius details amino acids 353 to 369 (17 residues), see Phobius details amino acids 377 to 401 (25 residues), see Phobius details amino acids 421 to 446 (26 residues), see Phobius details PF02378: PTS_EIIC" amino acids 62 to 386 (325 residues), 87.9 bits, see alignment E=7.1e-29 PF00563: EAL" amino acids 497 to 731 (235 residues), 214.8 bits, see alignment E=1.2e-67

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0208)

Predicted SEED Role

"PTS system, cellobiose-specific IIC component (EC 2.7.1.69)" in subsystem Beta-Glucoside Metabolism (EC 2.7.1.69)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.69

Use Curated BLAST to search for 2.7.1.69

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNW1 at UniProt or InterPro

Protein Sequence (762 amino acids)

>DvMF_0208 EAL domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MKAGSAEETVAPSTGGERIMGDAVADNAANRAAPWWRPLAAVFADVTERVADQPVVIAVQ
RALALVLPLVTVGAFALMVRHTPFPLLRAALDALFGPAWITMGDALVSGTFGIASLAVLC
AFSGTMAMVYNQRRGGQFVSPVMSAIVVLACFFVVTNPASDMPWRDMFSMDRGLLLAFMV
SVGGAWLFLRLSDVKRLQLPLEAVGHDPVVRDILTVMPAGMLTIVAFGLLRVGLVDSGIP
DLHGALRSGMTRPFIEGGNTLGLGLLYTGLSQVLWFFGAHGPNLLFPIEDAIFAPAGAAN
AAALATGQVPPFVLTKTFFDVFTRMGGSGSTLCLIAAILYASRDSGTRRLALVALLPALC
NVNEPLLFGLPLVMNPVYLIPFLLVPLAQTAAAHAATLLHLVPYTLPDVVWTTPPLLNGY
AATGSVAGSLMQALNLGLGVALYLPFVRASDALRERHGRHILAELLRTASGSEVGPAGRK
CIDRPGEQGRIASSLANDLAAALARNGEVFLEYQPQIRMDGRAHGAEALLRWHHPAYGRI
APPITVALAEDTGIIDRLGMFVLHRACARRVAWTGEVPDGFVMSVNVAPRQLQNPRFDRD
VLAVLARTGLAPHLLELELTESTVLLPDARTVAALRRLRAAGVRVAIDDFGMGHASLRYL
RDFPVDTVKIDRSLTEASHGDVNEHIVRSIVELARSLDITTLVEGVERREQFERFVELGC
LVFQGYLFSRPVRAVQCLEVVSGWGGHAAAPEQAVPDIPKGA