Protein Info for DvMF_0197 in Desulfovibrio vulgaris Miyazaki F

Annotation: 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 PF00037: Fer4" amino acids 355 to 374 (20 residues), 27.9 bits, see alignment (E = 3e-10) amino acids 391 to 412 (22 residues), 27.4 bits, see alignment (E = 4.3e-10) PF12838: Fer4_7" amino acids 359 to 410 (52 residues), 39.1 bits, see alignment 1.7e-13 PF13187: Fer4_9" amino acids 359 to 410 (52 residues), 28.9 bits, see alignment 1.9e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvm:DvMF_0197)

Predicted SEED Role

"Ferredoxin" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNV0 at UniProt or InterPro

Protein Sequence (491 amino acids)

>DvMF_0197 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MGHIAARDIYRRLGHAIDNTPVRTPWNDAFHAMLRELYTPEEAELVVRMPYRPSPLERLE
RVTGMNRARLQVLLDRLCDKGLVLDIREEGDHVPNTAGTAERRTASAHGHAEQRGQHEHH
GHDAHADRAHPHDHSPSPHGHSAPGAPASPAHDHPDDGCLYMISPIVIGIFEFTMMRTGG
ALPSKRWAELFHDYMFGDRAFLDANFGDGQRVSVMRALPHQETLGDHVEILDYERAAALV
EQNRTFAVGLCSCRHEKHHLGTRQCDVDMETCTSMGTGAEYLIRHGFARRIDKAAMHDIL
ARSRDLGLTLSADNVQQGVGFICHCCGCCCNLMQGIRQWGHAGVLVTSSFIARCDASLCN
GCGLCERACPVDAVSLPVPPGGRKRDRRCAVDEAYCLGCGACALKCPTGALRLHPRERKV
LHPADSFERVILQSLERGTLQNLVFDNPNSRTQEFMRGLVGGFLRLGPVKRALMGEALRS
RFLDAVRRMAG