Protein Info for DvMF_0176 in Desulfovibrio vulgaris Miyazaki F

Annotation: protein of unknown function DUF395 YeeE/YedE (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 174 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 38 to 58 (21 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details PF20398: DUF6691" amino acids 1 to 121 (121 residues), 27.9 bits, see alignment E=2.7e-10 PF04143: Sulf_transp" amino acids 34 to 169 (136 residues), 57.8 bits, see alignment E=1.4e-19

Best Hits

KEGG orthology group: K07112, (no description) (inferred from 100% identity to dvm:DvMF_0176)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8DNS9 at UniProt or InterPro

Protein Sequence (174 amino acids)

>DvMF_0176 protein of unknown function DUF395 YeeE/YedE (RefSeq) (Desulfovibrio vulgaris Miyazaki F)
MDLTYGLVTGILFGIFLQRSEVLRHDRQLGALRLRDMTIVKFMLSTVVVAMVGVYLLVDL
EMAKLSVKPLVLGGNIVGGLAFGLGWGLLGYCPGTSLGALGEGRWDALWGILGSLCGAAL
YAEAYPAMKTTLLTWGDFGKVTLPQLLGVNHWVVIVPMVAGALLLFRWFERKGL