Protein Info for Shewana3_4025 in Shewanella sp. ANA-3

Annotation: two component transcriptional regulator (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 227 PF00072: Response_reg" amino acids 4 to 112 (109 residues), 94.9 bits, see alignment E=3.5e-31

Best Hits

Swiss-Prot: 46% identical to PHOP_SHIFL: Virulence transcriptional regulatory protein PhoP (phoP) from Shigella flexneri

KEGG orthology group: K07660, two-component system, OmpR family, response regulator PhoP (inferred from 100% identity to shn:Shewana3_4025)

Predicted SEED Role

"Two-component system response regulator OmpR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L2H3 at UniProt or InterPro

Protein Sequence (227 amino acids)

>Shewana3_4025 two component transcriptional regulator (RefSeq) (Shewanella sp. ANA-3)
MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLPKLDGI
SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA
GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD
QDFDLDSNVIEVFIRRLCKKLDPDNQYNLIETLRGQGYRLRVISPDE