Protein Info for Shewana3_3908 in Shewanella sp. ANA-3

Annotation: competence/damage-inducible protein CinA (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 TIGR00200: competence/damage-inducible protein CinA N-terminal domain" amino acids 1 to 408 (408 residues), 392.3 bits, see alignment E=3.4e-121 TIGR00177: molybdenum cofactor synthesis domain" amino acids 2 to 163 (162 residues), 91 bits, see alignment E=1.1e-29 PF00994: MoCF_biosynth" amino acids 6 to 170 (165 residues), 111.9 bits, see alignment E=2.1e-36 PF02464: CinA" amino acids 254 to 407 (154 residues), 183.2 bits, see alignment E=2.5e-58 TIGR00199: amidohydrolase, PncC family" amino acids 262 to 408 (147 residues), 139.3 bits, see alignment E=1.6e-44

Best Hits

Swiss-Prot: 100% identical to CINAL_SHESA: CinA-like protein (Shewana3_3908) from Shewanella sp. (strain ANA-3)

KEGG orthology group: K03742, competence/damage-inducible protein CinA (inferred from 99% identity to she:Shewmr4_3712)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L257 at UniProt or InterPro

Protein Sequence (425 amino acids)

>Shewana3_3908 competence/damage-inducible protein CinA (RefSeq) (Shewanella sp. ANA-3)
MMKLEMICTGEEVLSGQIVDTNAAWFASTMMEHGIEIQRRVTVGDRLEDLIAVFQERSLH
ADVILVNGGLGPTSDDMSAEAMAKAKGESLVENREWRQHLEDWFTRNNREMPVSNLKQAM
LPESAVMVDNPVGTACGFRVKLNRAWLFFTPGVPFELKHMVKEQFIPFIREEFDLDAKVA
LKKLLTIGHGESSLADKIEPLELPEGITIGYRSSMPHIEIKIFARGEKAIALLPRVTGHI
KMVLGTAVVAEDKATLAEEIHTKLLNSGLTLSVAESCTGGMITSQLVDFPGSSSYLQHGL
VTYSNESKVRVLGVNPATLDDHGAVSIPTVEEMAKGARAILDSDFALATSGIAGPDGGTE
EKPVGTVAIALATRSGVYSQMIKLPRRSRDLVRSLSAAVAYDMLRRELLTEAVIVDYQSI
GRFSK