Protein Info for Shewana3_3884 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 35 to 57 (23 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 96 to 113 (18 residues), see Phobius details amino acids 120 to 137 (18 residues), see Phobius details amino acids 143 to 160 (18 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 198 to 222 (25 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 257 to 279 (23 residues), see Phobius details PF00892: EamA" amino acids 7 to 136 (130 residues), 59.7 bits, see alignment E=1.8e-20 amino acids 146 to 268 (123 residues), 38 bits, see alignment E=8.8e-14

Best Hits

KEGG orthology group: None (inferred from 99% identity to shm:Shewmr7_0257)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L233 at UniProt or InterPro

Protein Sequence (306 amino acids)

>Shewana3_3884 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MQRPVVIGLILLIVGNLFSAFYDVSIKWLPEDANAATFLLVRQITSVLMLLPIWLYSQRP
KTEHISVHLWRANIGSVGALFLIIGLMALPLATVSSLFYSAPLMIILMGYWFLKERITTG
QVACTLLGFVGILIILRPSEMNWFGLAVLFSAFTFAVNQLTLKKVPNTEHPVLTLMLYNL
LGIPATLIIAAFQGLEGLSWGLLAVALLSNAFLLIYHWFCVLAYRRAQASDIAIAEYTGL
LFVVFLGWLLFDEWLDSLSWLGAALIVLPSLFLPWIGMWMAKSPKVMDNIQVKALGLEAV
EGEPKP