Protein Info for Shewana3_3880 in Shewanella sp. ANA-3

Annotation: LppC family lipoprotein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF04348: LppC" amino acids 47 to 622 (576 residues), 356.1 bits, see alignment E=2e-110

Best Hits

KEGG orthology group: K07121, (no description) (inferred from 100% identity to shn:Shewana3_3880)

Predicted SEED Role

"LppC putative lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L229 at UniProt or InterPro

Protein Sequence (627 amino acids)

>Shewana3_3880 LppC family lipoprotein (RefSeq) (Shewanella sp. ANA-3)
MLKSLNTTKFVSVAILSAVLAGCGSQAPSSTGTAPTVATSLASAPLAPNVYLAQAANSKD
PQQRDTNLLLAAHAYINANDYAAAQKLLKSMQPSLTQTPTLVAEHKYLTARVLEHTSTYV
EALKTLSYPSTWVLPGWQMAAYHQFRAHLFQLNKQPIEQVRELSSLTTYLPPAEASEVNN
QIWQVLQPMHEQTLQTFIRDANNPVFAGWLQLAYIAKHYAVDPNQLVRYLGDWQKQNPYH
PAAAKLPTDLDRALNAKPFMPKNIAVLLPLTGQRASAANAIRQGILASYLAKPNEQVAVN
FYDTANDAVAAYQQAVNAGAEFIIGPLLPNEIDQLLALNNTAPATSTPTGTAPAAPTAPI
APIPQLFLNQTDKFVSDINKFYFALSPAQEAADAATRMYQDGVTMPLLLASNDAIGKRMA
ESFIQAWKKKSDTPIEVYYYDGGDKMKTTVQDALGVRDSQARIARIKELLGNSVQADFRS
RQDIDAIYMISTPQDLTLLKAFIDVNFSVFTQPVPLYTSSRSRIDNESSQTAQDLNNLTM
SDAPWLMQNSEENLMVNTLWSGWNNGQKRLFVMGYDAMDLISKLAQMRSFTGYQFNGRSG
VLSVNPDGVINRQLSWGRYQRGSFRQL