Protein Info for Shewana3_3866 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3866)

Predicted SEED Role

"Glutamate synthase [NADPH] large chain (EC 1.4.1.13)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.13)

MetaCyc Pathways

L-citrulline biosynthesis (7/8 steps found)
L-glutamate and L-glutamine biosynthesis (6/7 steps found)
ammonia assimilation cycle III (3/3 steps found)
L-glutamate biosynthesis I (2/2 steps found)
superpathway of L-citrulline metabolism (9/12 steps found)
L-glutamine degradation I (1/1 steps found)
L-glutamine degradation II (1/1 steps found)
L-asparagine biosynthesis III (tRNA-dependent) (1/4 steps found)
glutaminyl-tRNA^gln biosynthesis via transamidation (1/4 steps found)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.4.1.13

Use Curated BLAST to search for 1.4.1.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L215 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Shewana3_3866 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MKNIMAVILWFLGVSAATPVFADKASPEQLARLYLDFMAQTSRQSEALWPGFRLDDKVHL
FSYAGNVWLRQPGGEIIQDNSVLESVNLHSGLSINFGFPQYQGQAGVLIQLESPTIQFDS
TTKTADLPFVIWAGNSVHEAFHFYAQSEWRVLEDARRYEGEVYPLNLDARYYRLQLFNAL
MAALKQPEQQAQYLGYAAYWLQVWRQTAPNEDKVSYVNDLVEGSARYVELIAGARFLSQN
QSYLGYQQILLQYVQDYYQQQQMLGGWTAEAENIGALAGILLDSTQDAYVWKESVMSGML
PVDLLLSRIKPIAPPVAQNMAQKKRLQDMLAYYPATEQKLTQLLKDVQDPKVPLLVMPSV
SDSSSFIDVGEVRSGFYVVPYQEEMTQAYLGMSSQFSNLNVSGSPLLDVPLQNYCEGIEA
ATLLPLGFTFQREGQYLVFNEPEIHGTIRVSASVVEGRTLYCAMN