Protein Info for Shewana3_3829 in Shewanella sp. ANA-3

Annotation: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1505 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 795 to 814 (20 residues), see Phobius details PF07494: Reg_prop" amino acids 52 to 74 (23 residues), 19.6 bits, see alignment (E = 3.7e-07) amino acids 98 to 119 (22 residues), 17.7 bits, see alignment (E = 1.6e-06) amino acids 314 to 335 (22 residues), 17.7 bits, see alignment (E = 1.5e-06) amino acids 596 to 618 (23 residues), 16 bits, see alignment (E = 5.6e-06) PF07495: Y_Y_Y" amino acids 723 to 786 (64 residues), 54.4 bits, see alignment (E = 4.8e-18) PF08447: PAS_3" amino acids 877 to 939 (63 residues), 42.7 bits, see alignment (E = 2.9e-14) TIGR00229: PAS domain S-box protein" amino acids 879 to 953 (75 residues), 27.1 bits, see alignment 3.8e-10 amino acids 958 to 1075 (118 residues), 49.9 bits, see alignment 3.5e-17 PF13188: PAS_8" amino acids 958 to 997 (40 residues), 23.9 bits, see alignment (E = 1.4e-08) PF00989: PAS" amino acids 958 to 1065 (108 residues), 24.9 bits, see alignment 8.4e-09 PF13426: PAS_9" amino acids 965 to 1067 (103 residues), 29.3 bits, see alignment 4.4e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 1076 to 1238 (163 residues), 152.9 bits, see alignment E=6.6e-49 PF00990: GGDEF" amino acids 1079 to 1236 (158 residues), 174.2 bits, see alignment E=9.3e-55 PF00563: EAL" amino acids 1258 to 1490 (233 residues), 252.5 bits, see alignment E=1.8e-78

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3829)

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1X8 at UniProt or InterPro

Protein Sequence (1505 amino acids)

>Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) (Shewanella sp. ANA-3)
MIGVILSHPVLKLFFGALCLLSLCGAPLTGSALPLNAANTQLKFEHIRSEEGLNQNTITS
LFMDSAGMLWIGTQDGLHSYNGYNFNLFIHSPNNPSSISESFISDIIQDAEGYLWIGTFS
QGVNRLDLNTGTFERFGLEQGLTDPRVTKLNIVGNTLWIGTQGGLFSLSIKTQRITQVSL
GNSVEPHITSLANVENTYLLAGTRASGTFALSSNAITRLNVPQDLTAYQIKANSTRAITL
ALGNQLWHYDLVSHQGSILWQAEDDIPYLKDFIQTPQGQFWVVGPEAGLIQLEREAGRFV
AAYHKYDMQRPNSISDNNILCLLQDTFGNLWLGGSYSGLNKINTRRQYFQHLFEYTTELP
QQSNNIRTIFRSQDKALWIGTEGAGLKRLAFNAKQYEHYTSAFAKALGKETRHLNLVLRA
ITQDRQGVLWFASNYGLGRLTPSGEFTLLKLTQSQDPASEANYIRSLELDAQGQLWVATS
HALYRKALEKDEFTSVPLTDIENFHPTQNLLLILRADGNTLWIGSLNGLVKLDMQTGQGQ
AFYHDPENKNTIINNRIRDILVASNGDVWFATHGGISRLSAQAEDMVFRDYTREQGLPSD
TIYALLEDDEHHIWFSSNAGIGKLNPSNGKIINFNEQEGLQALEFNGGVKLKDSDGDLWF
GGINGINRFNPKAIPDQRSEAKVALTAYKIAGKRHTILDLSHPPKILMNYDDQLVSFEVT
SLDFSYTGKNRFSYYLEGFDNQWHDLPSGNEITFTNINPGHYVLHVRHSLEYNSEGSYAL
LVDLTVKAPFYRSQIAYALYVLLALGLMGWIVLWRKQKREQQQEFETSIRASEERLKLAL
WASGDGMWDWNIQEQQVYRTHTDIPVSQWSSHTLLHDNAHPEDRERFKQVLTDHLQGHTP
FFEMEYRIEHSPGNWLWILERGKVVETNNQEQPMRMTGTTRNITSRKLIENELVLSSQVL
NSMNEAVVVAGLDYRIRSVNPAFSAITGYSERQISDKYLIHLAYSRQQRDLFNSIEQQLL
RHKHWAGEIWIRNRARKAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLAS
FDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAV
AHRLQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLTIS
TSIGISLYPNDAEDVDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHVQLEAGLKQ
AISRNELSLVYQPKFCLRKGSLTGLEALLRWHHSELGPISPAEFIPLAEETGIINQIGHW
VINHACQQLAEWNELGFGDISMAVNLSARQLKADIISTIEVALSVSGLPAKALELELTES
MIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDP
DDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCLALL
QQRIK