Protein Info for Shewana3_3788 in Shewanella sp. ANA-3

Annotation: SNF2-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1148 transmembrane" amino acids 898 to 913 (16 residues), see Phobius details PF00176: SNF2-rel_dom" amino acids 463 to 794 (332 residues), 159.4 bits, see alignment E=2.2e-50 PF04851: ResIII" amino acids 485 to 660 (176 residues), 24.3 bits, see alignment E=5.4e-09 PF00271: Helicase_C" amino acids 819 to 940 (122 residues), 39.6 bits, see alignment E=1.1e-13 PF04471: Mrr_cat" amino acids 1009 to 1126 (118 residues), 47.3 bits, see alignment E=4.4e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3788)

Predicted SEED Role

"helicase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1T7 at UniProt or InterPro

Protein Sequence (1148 amino acids)

>Shewana3_3788 SNF2-related protein (RefSeq) (Shewanella sp. ANA-3)
MKNWISSLFSSRNTKFKFSYDITKNSIDFYCPEKQFQDIKKGDADDFLTAQYIALQMLAE
EGSAESIPNGFIVKHQVIAALDEDVHQLLNLPEIWNGQANVDIRGTTFEGSFDVTIHVDA
PSGRMTSAYQVDGSIISFGNAQFTLKKVMFDVFSALKFHKESSKNESENLLLLHTFQQAQ
RAGAKLSLNHFNKLDIHVPDKITVEAELDSVGNLILTPQMGQKADHDSLQRVLGQIQSER
GRTLKVGNEIILFNEKTAKAAKEIISNRTIPKSQVKNFLEAPGAYLDASLIDLDVGFSLR
VKGATRFKHAYFGETDESGIDWFGQSQASSQILPISSVIKEIKTDDDRLQLTKILNDAKA
TGATEVKFEGKNYDIGSDSEVYEVLKKIEQKLIQQENTETDEGRDNTEAPGPQESDDSPI
VIDIALNDEELDSPSKLVEEELNNVLYSQGISWDNYRREPFPHQIIGVKWILGLEEIARS
KELVNGALLADDMGLGKTFMSLAAIEQYYCICEENGDVCRPTLIVAPLSLLENWKDEVAE
TFHKSPFKDIVILQSDGELNSFRDGGIETKASNIDDESFKPRYSLKFGEQHGAARLDLPC
RLVITTYQTLRDYQFSLSQIDWGIVVFDEAQNIKNPNALQTRAAKGLKARFKLLATGTPV
ENSLADFWCLMDTACPGFLDSYQSFRHTYISPILQAAGDEIESVRASLGRKLREKVGALM
LRRVKEDNLERLPKKNMFVGLEPTEWQYEPKLHSIMDSYQQKVYEGSIESQLENEESHVL
TTLMRMRDTSLHPRLADGGRLDAPSSKNDLKQIFAESAKLKKMIEVLTDIQSRREKCIIF
AINKRLQRFLSIALGNYFGLGPLHVINGDTKAVVKNKNTANRKSMIAEFEAKEGFNLIIF
SPVAAGVGLTVVGANNVVHFERHWNPAKEAQATDRVYRIGQTKDVNVYVPILHHPTIESF
DVNLHRLLSQKSMLKDAVVTQGEVMPNPAGADKHQLTADSIINSEDIPRLSWKQFEAFCV
ELLSKEFNADSAWLTKEGPDFGADGLLISGQEAILLQAKHKQGSYKGHNAVQEISNAKAM
YGKHLGRPIGKQIFITNATQLAKSTREIAQELSVIIIDGNDLSDLCQCHRISFAQVLNRL
SKQRYVVR