Protein Info for Shewana3_3668 in Shewanella sp. ANA-3

Annotation: regulatory protein CsrD (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 636 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details PF00990: GGDEF" amino acids 223 to 378 (156 residues), 57.2 bits, see alignment E=1.8e-19 PF00563: EAL" amino acids 403 to 632 (230 residues), 163.9 bits, see alignment E=4.4e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3668)

Predicted SEED Role

"MSHA biogenesis protein MshH" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1G8 at UniProt or InterPro

Protein Sequence (636 amino acids)

>Shewana3_3668 regulatory protein CsrD (RefSeq) (Shewanella sp. ANA-3)
MKFTRMLTTKLTSFWLMSLAAIAFVFLLSAMMSFVQLTYKFQQQKVTELESLLIEHYQTQ
PDWELESWLPPMLLAYNAVEFRLTMKSEVLFAYQGNVQTQNAMVYTHLLDPQSGLNMTLT
LPQPFEHYSVSWYELLILGVGLLAVIALVRFGHVWFSQQLDGIEELAQRSRLILQGKHEQ
ALATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRL
DALSHDQGMVAHGVIYLLEMDDLDLLQQAKGESAVKELLHATVNSINSILQTLPNSIFAR
RSHNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDDVENQDNFYHLGCAYFTAGDNVNQ
LLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQPVM
DSDGVEHHKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLGLLSQEKHKN
QVYSVNLSLDTLMSRAFTQWLKTTLLEYRHLTPQLIFEVSEDIVILHQDKLKPKLDMIRK
MGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHIHLRPENQLFIRSLIGGLYRTEV
QVCAEGIEVFEEWQTLQILGVGMAQGMYFSEPIEVQ