Protein Info for Shewana3_3651 in Shewanella sp. ANA-3

Annotation: methylation site containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details PF07963: N_methyl" amino acids 11 to 35 (25 residues), 27 bits, see alignment (E = 1.2e-10) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 14 to 35 (22 residues), 24.4 bits, see alignment (E = 9.2e-10)

Best Hits

KEGG orthology group: K12285, MSHA biogenesis protein MshO (inferred from 100% identity to shn:Shewana3_3651)

Predicted SEED Role

"MSHA biogenesis protein MshO" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1F2 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Shewana3_3651 methylation site containing protein (RefSeq) (Shewanella sp. ANA-3)
MGALSAKRIARSSRGFTLVEMVTVILILGILVVGVSSFIFFGTRIFVESSSVDQVLSQSR
FAIERMTRELRSAVPNSVRLNGNGLTYQCVEFVPIEASTTYLAMPIVPSAAALTGTVILN
ATDNIKDNQYIWIYPLTDNDVYNSARQKRAQIKTFTPLGEPPNPANQVTLTFMASTRFAE
ASPRQRIYFGSSPVSYCFEKSSSSNELILKRYTGYGLNVSQPTPSSMSAGVLMAQNVANA
LNDSADLPLILTPSSLVNNAMVHLQPRFNVNGETFQYRHQVQVINVP