Protein Info for Shewana3_3649 in Shewanella sp. ANA-3

Annotation: MSHA biogenesis protein MshQ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1248 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF20419: DUF6701" amino acids 647 to 787 (141 residues), 153.7 bits, see alignment E=6.5e-49 PF28243: DUF6701_2nd" amino acids 794 to 890 (97 residues), 88.8 bits, see alignment 7.5e-29 PF28247: DUF6701_3rd" amino acids 901 to 1084 (184 residues), 148.8 bits, see alignment E=4.8e-47 PF28238: DUF6701_4th" amino acids 1098 to 1247 (150 residues), 141.8 bits, see alignment E=5.2e-45

Best Hits

KEGG orthology group: K12287, MSHA biogenesis protein MshQ (inferred from 100% identity to shn:Shewana3_3649)

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1F0 at UniProt or InterPro

Protein Sequence (1248 amino acids)

>Shewana3_3649 MSHA biogenesis protein MshQ (RefSeq) (Shewanella sp. ANA-3)
MVKFRLILSLLIIVCSSPLAKADWSKTFIEGVNNYDRNGSITFNSSYLYNAPNNALIWYS
YLPTYNFIQKGNSLATLCVTSNNSYRWCQDGDYIASLPSNRIDFSQCTSSGTVNIGPPTW
DNKQINVIEGEYNNIVLDGGSDKTIRFVSNNGVYKMKSLKATSGRIELAAGQYWIETLSI
NDGVTLVFPSTGTVSFFIKNNYRHYNLNTIGQAEKFLIYSYSNFTLNGEASLKSYVVAEG
NAVLDGSSYLEGAITARNISLGGNSSIKFDDNAAKIDVVPNCNPAPVLQCFNDNFSLSAL
SNDWVVSRSSGTFTPAIVSGRMRLTEAKSNQSTASTYQRLFPAANNLVEIQFDHYAYGGN
GADGIALVLSDAAITPQPGAFGGPLGYGYKPGISGFAGGWLGIGIDEFGNFSGEGGRVNL
SGQRRQSVVVRGSGAGTSGYNYLRGTCNDGKSNTSGNCLSPTVDGNNVSPAHRYKITIDS
QVSGKSIVKVERNTGSGFVTLIPAFDAIDEQGQAAIPTDFLLSLTGSTGGSNNNHEIDNV
QICALKSNPIGAQIDHFEFDHTGQGLTCNPETVTIRACANASCSQLFTDPLAATLLPESA
SEGIWIGGKQVSFSNGSTQLQLRRNTPGVVTLGVKGSSPTTKPLSKTLCRIGNGGMSENN
CSLTFADSGFVFDVPDKLANKPVEVLVKAVKKSDVTKQCVPSFQDQTKILNFWSQYVEPS
APITPKAVTVNNTAISTASATPTVLSLGFDVNGQAKVSVNYPDAGKLQLDAQYIGSGNEQ
GLVMTGSDQFVSVPAGLCVKPVDASASCSSADMSCNAYRKAGQNFGMTVQAMAWEKDGDT
DFCSGNVSTPNFSDQAMTLTSKVVAPNMASGGHDGALGVASYSHTIQANNLNSITNQTIS
EVGVFQIAAQASPNYLGAASSLNIPIGYSANIGRFVPDRFLVGDISVLPACGSFSYMDQP
FPMSMSLTALNIGGAVTQNYFPPFSLATAKLVGENNNNGIDLQSRLSALPVNAASWVQGV
ATVDGAYRANLSRVTPNVATNLYQDGPFELLDIGVQLMDNDPRPNGLFSYVASPDMDAAT
TGNCTNCNAKKITTQILRHGRVVMDNTYGPETEILRMPTRAEYSNGANWVLNGDDSCTIA
TYGLASQVDNAALGYNFDPDLTTGQSINRSGASSAFQAGQFDLLWRALTSSGNLYRGQVT
APLDVPTWLEWYWNWNGVSPTSLSDPRASAFFGRYRGHDRIIYWREVN