Protein Info for Shewana3_3643 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1417 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 1227 to 1240 (14 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 8 to 1278 (1271 residues), 1485.5 bits, see alignment E=0 PF13116: YhdP" amino acids 8 to 1269 (1262 residues), 1120.8 bits, see alignment E=0

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3643)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1E4 at UniProt or InterPro

Protein Sequence (1417 amino acids)

>Shewana3_3643 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MATLFTAKKLSRFCWQLLALILVLFALTVSLIRGLLPQVDGVRQQLVEYVKSEYQIDVQV
GELSAQWQAFGPAVTVDNLVIPLQEKLPVTVLVKNVQIKLDFWQSLLTTSPRIEDVNFDG
VHIALDIDKLSGNMAPGAANQTAQTDWLYKLLLKQLERFSLTDASVQLLSLQHEYRPIHI
RHLNWRNSGERHRGAGEIYLDNNASVNESLSLQLDIQGDATAPDTLKGQIYLAAQSLDLG
EWASRQPNPYDPSQKLPLEGVVNLKAWFDFAHRSLSAGQVQFEPSWLQWSMEDAPQKFEI
QSGSISWVPKDTGWEISSTDLNFVTNGEHWPDLKLAAKQQDDAFYAYVSRLDLPTLFPLL
PLFPGVDLAVLEQWFYLAPEGSVGPIRFYQSAKQPLLASTHIKQLHWQKVEGIPNTNPLD
LALQWQNDSLVFSLPEQTYTLDFGDQFSAPLVLHGAELTGAFDTHRATLSVPEVQLENDD
IGVSAALKLDFSAEASMSLAANVAVKNAANADRYFPVKAMGEALVEYLDGAIKAGQSQNA
QVLWQGALGHFPFEDNSGVFQAAFTLDNAEYQFQPDWPAVTELSLDALFENARMDIWVNQ
GKLMNVVADGAHVFIPELGEHSLLKIQADLATNGSDATKVLQASPLADTVGKTLSVVQVQ
GAVTGNLDISIPLYEGEAEDIRGQIAFDNTPVFIAQPGLQLKAVTGTVQFANEIVEGKGI
KSRLFEQPFEFSFATKPEGKDFALNVDMKSRWDLSRLPQELQNPLSDFYQGKFAWGGNLN
MVFDDKGYQIQANVGSDLVGATLKLPGAFAKPEDEPRPLIAEFSGDQQTATLRVKLDKQA
EFIGGFEAEKGTQFSYFDLLLGRLFDAAEVPNTELGHIKIDVTSGKLANWLPVINAFVGT
DNKPTRTGILVEETSHSALFPSVVGIDANIGKFDLLGQGLTELRLSAKPNEHGWRFDAKA
SEFEGWVDFYPNWMTQGLKVNASKFYFSPEVKPEGEADFAADQVLTNLPPVAVNVEDFRF
FDKAFGKLVLQASPQPLGYRIQTLLLTTPEVSLQGNGIWQQQNAQNQTELTVSLNASQFN
YLSQQLGIDPGVNEAPLKMNAELKWQGAPYAFSLNTLNGKVKFELGKGHLSQVSDKGARI
FSLFSLDSLVRKLSLDFSDVFGQGMYFNSFSGTLQIDNGVVKTTDTEMDAIAGNMKVRGY
TDLTSESLNYDIRFVPQLASSVPTVVLLSTSAWTLGLGAFALTKVLEPVIEVISEIRFRV
TGTMSDPVVEELERKSKEIEIPESILPMVGGELPAPTEGAEPKADAVPVKNGAPTKIEAT
PTVEPEKNNEQPAPDADKPKVEPVKAVEEEASPQAPTLPKVEPAEPPQVEPEQPKPLSTK
VVLSINTIQGDSHAHQPVAMSEQSRRQRESVVYRIAA