Protein Info for Shewana3_3633 in Shewanella sp. ANA-3

Annotation: Ig domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 829 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF02369: Big_1" amino acids 181 to 230 (50 residues), 37.9 bits, see alignment 7.1e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3633)

Predicted SEED Role

"Invasin domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L1D4 at UniProt or InterPro

Protein Sequence (829 amino acids)

>Shewana3_3633 Ig domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MRFSNTFCNLTLLSIGLFGLWGCNGPSDEDNGGTDASDGTYKLSIDFKTLSGSQCGSFTS
LQSFPKDAGFCAVAKLNKGSAKVSNQRVNFTSDLGTLTPESKLTDNNGEAVVIVSNPDLL
INAGTITATTTPNDSSTALSATRNFEFTGTIDGTGASIAPKLSASIQSGANVVTRFKVDE
AVQLQAIFLDAESNGIADAKVTFSAGSATLTPASALTNSQGIAQVSYTPSATELGANALT
VTVDYQGQSLQSSSLYEVLSKDAVNEAGTLKLGSFTGGSFTEGKLASTLTAQADGSYKIS
AGGSFGVTASLVLEASDGTITRVQTPSSISFSSDCTASNNANLDTPVTTLSGNASSTFQD
TSCSGNSERNDQIVATTVVGNQTLTANFPFTLQRQTLASLSFEAAEPNQIRIKGAGGTGS
SESSLVSFKVTSANGQPAAQQKVSFSLDTVVGGLSFANGSASAESLTNSQGIASVRVLSG
TVPTPVRVVASAVDADTKEVITSQSEQLTVNTGLPQQLGFGLSTTIFNPEAGDYNGETAT
ITARLSDSFGNPAPDDTTVNFTTEGGQIAPSCLTQNGACSVTWTSSDYRPQDHRITILAY
ALGHETFFDTNGNNQFDSADGGAIANACLFNGVATNCSGNGMDVETFHSSGFSDLPTAFR
DDNENFSRDSGEPYFDNLARETYPVADGKFNGPQCEGSLCGTGQANKTYVRKALVLSMSG
SQAYISVQQDGVLLASVNDIKPVAAGSESKFVVFVHDSAKQIMPAKTQIELCVDCNGTPD
IIEVANTLTAKNGLGTPLSFTASAGSQISVVTTTPKQIKTSLSFTVPTL