Protein Info for Shewana3_3572 in Shewanella sp. ANA-3

Annotation: acriflavin resistance protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1027 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 361 to 381 (21 residues), see Phobius details amino acids 388 to 413 (26 residues), see Phobius details amino acids 434 to 452 (19 residues), see Phobius details amino acids 464 to 489 (26 residues), see Phobius details amino acids 522 to 543 (22 residues), see Phobius details amino acids 863 to 883 (21 residues), see Phobius details amino acids 890 to 910 (21 residues), see Phobius details amino acids 916 to 937 (22 residues), see Phobius details amino acids 962 to 981 (20 residues), see Phobius details amino acids 987 to 1011 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1013 (1011 residues), 542.9 bits, see alignment E=7.1e-167

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3572)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L175 at UniProt or InterPro

Protein Sequence (1027 amino acids)

>Shewana3_3572 acriflavin resistance protein (RefSeq) (Shewanella sp. ANA-3)
MNIAEYSIRHKVISWMFVLLLLVGGGVSFTGLGQLEFPEFTIKEALVITAYPGASPEQVE
EEVTLPLEDALQQLDAVKHVTSINSAGLSQIQIEIKETYDKTSLPQVWDEVRRKVNDTAG
QLPPGTSTPKVYDDFGDVYGILFNLSGPDYSNRELSNYADYLRRELVLVPGVKKVSVAGS
VTEQVVIEISQQKLSALGLDQSYIYGLINNQNVVSNAGSLVVGDNRIRIHPTGEFSSVQD
LARLIVSPPGSTELIYLGDIAHIEKDYDETPDVLYHNRGEAALSLGISFSSGVNVVEVGK
SVSERLAELESQRPIGMNLDTVYNQSLAVDDTVNGFLINLLESIAIVIAVLLLFMGLRSG
LLMGLILLLTILGTFIVMKVLGIELQLISLGALIIALGMLVDNAIVVTEGILIGLRRGKT
RLEAAKQIVTQTQWPLLGATVIAIIAFAPIGLSQNAAGEFCRSLFQVLMISLFISWITAI
TLTPFFCHLLFKDAPADDEEQDPYKGWFFSLYRASLTFALRFRIASILLVGAMLVTAVIG
FGHIKNVFFPASNTPIFFVDIWMPEGTDIKGTERFTADIEQLLLKQAEEQHSGLKHLTTV
IGQGAQRFVLPYQPEKGYPAFAQLIIEMEDLASLKVYMSELERQLNQRFPQAQYRFKNME
NGPSPAAKIEARFYGDDPEVLRALGAQAEAIFHAEPSMDGVRHDWRNQVPLIRPQLQNAQ
ARETGISKQDLDNALLINFSGKQIGLYRETSHLLPIVARAPAEERLQADSLWKLQIWSSE
HSTFVPATQVVSQFETQWENPLVKRRDRMRMLAVLADPKLGSDETADSVLRKVKDKVEAI
SIPAGYHLEWGGEYETAGEAQTAVFSSIPLGYLAMFLITVFLFNSVRQPLVIWFTVPLAL
IGVSAGLLIFDAPFSFMALLGLLSLSGMVIKNGIVLVDQINLELDEGKPAYIALVDSSVS
RVRPVMMAAITTMLGMIPLIPDAFFGSMAITIIFGLGFASLLTLIVLPVMYSLAFNIKPN
AVASEQH