Protein Info for Shewana3_3428 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details PF04519: Bactofilin" amino acids 198 to 284 (87 residues), 31.6 bits, see alignment E=2.4e-11 PF20597: pAdhesive_15" amino acids 234 to 514 (281 residues), 40.6 bits, see alignment E=4.4e-14 PF23981: DUF7305" amino acids 384 to 518 (135 residues), 74.7 bits, see alignment E=1.4e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3428)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilX" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0T2 at UniProt or InterPro

Protein Sequence (541 amino acids)

>Shewana3_3428 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MDNLRPALSNKEHGAVLLIVLVFSLLASLLVVTSLRDNLVQERLSGNFQKQVNAQLLAEQ
GMHESYNQLKTQLQRAPNQGLQTLYEQLPAEADGSLEGSSYALENGQIAGADLSLDSRGN
HLEGEAKLNAQFTLQGSHGNTIFNDAIVSCESLNLTGSSSIDGYDSRKGAYGDSISNGQG
GSELNQHGKGNVTTIEPNANITLTGNAPIYGDVSATGSVTLTGSSDIHGSIQANNDVTLG
TGTIGGNVAAGNNFNLANSGTVAGSVKANNNAATAPKAQVNGTLQYGGDGNFHQDSQIGN
LVNARPNVPPVPTKSCDPLDIGAVMGGFKMPNNGARRIDSNANVTITPSGSSKTELGWKG
DYFPSLTPTSENIFGSDTPVFNLDSLVMSADGVLNISGGDVTLIVNGDFKMSGSNQLNIA
PGSSLTLFVGGEVAFTAGTNNGNNIKGQTLTDSNKPPLSIFSGSDKDVTVSGNVPIYAAL
YAPKSKVNLPGGPEIFGSVRGKSITATGNGKIHYDNALGAADLGEGNANPAVILLKQWQY
L