Protein Info for Shewana3_3396 in Shewanella sp. ANA-3

Annotation: glucose-methanol-choline oxidoreductase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 PF00732: GMC_oxred_N" amino acids 80 to 295 (216 residues), 169.3 bits, see alignment E=1.7e-53 PF05199: GMC_oxred_C" amino acids 380 to 514 (135 residues), 78.2 bits, see alignment E=1.4e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_3396)

Predicted SEED Role

"FIG022869: Oxidoreductase, GMC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0L0Q0 at UniProt or InterPro

Protein Sequence (533 amino acids)

>Shewana3_3396 glucose-methanol-choline oxidoreductase (RefSeq) (Shewanella sp. ANA-3)
MAIIDPIVTGLNSGWLHTDASQLQENQQFEADVVIVGTGAGGGVAAEILTQAGLSVIMIE
AGPLKSSSDFNMEERVAYPNLYQQAAAMKTADKAIGIFQGRAVGGSTTINWTTSIRTPKE
ALAFWAQHKSVAGLDPEALAPWFEQMEQRLNIHEWNYEPNRNNGALKQGCINLGWDYTVI
KRNVAGCWNTGYCGMGCPVNAKQSMLVTTIPTALEKGAQLVSRAKVVKIEHHNGQVFALK
AQALDVNLRPTSVELLFKAKHYILSAGAIHTPTLMMRSEVPDPYQLLGKRTFLHPTVLSG
GVFADAINAHSGAPQSIYSDEFVWKNGADGELGYKLEVPPVHPILIASKTIGYGISHAEL
MAQFNQLQVTIALIRDGYHPDSQGGQVHLTSTGFALDYPLTEAFWRAARRAYASMAELQF
SAGALKVLPISDGMPYLSSWKEAKESIAQMDLAPLRTVVASAHVMGGCPFGEDEKLSMVN
SFGQSHYLDNLSVMDGSIFPTSLGANPQLSIYGITARNATALAQKLTDGREPQ