Protein Info for Shewana3_3129 in Shewanella sp. ANA-3

Annotation: type IV pilin biogenesis protein, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1168 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 688 to 925 (238 residues), 64 bits, see alignment E=6.5e-22

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 100% identity to shn:Shewana3_3129)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZY4 at UniProt or InterPro

Protein Sequence (1168 amino acids)

>Shewana3_3129 type IV pilin biogenesis protein, putative (RefSeq) (Shewanella sp. ANA-3)
MLIKPLTFCTLFAFIAAPVSTFGDDTELYVKESTTRTGARPKVLVIFDNSGSMSTEEITQ
VVDYDPSYDYPPVSGSGYSDSRIYYTVGGGALPTPDTNSDRRNFSASINGCNQSKAALDQ
YGRFTGYIREFTSSGTTGVWKELPETDGRNITIVDCWEDITKVDPNNSSSYNDGFPANGL
TTGSGKKKKAYPYFISSYPSSTWGDALAAAKNTDFGVGQPVTFYSDNYLRWYWLSKAGKL
PTMKVARLDIAKKAISNIISSTPTVDFGLAVFNYNYPNEGNRDGGRIVSGITQMTDAARD
SLLLTIDKLPAKTNTPLCETMYEAYRYFAGQGVKYGHGDTDYGSYVGNRPPYDTSVEKGG
AYSSPFKVCTDIAYVIYVTDGSPTVDKSANNDVISLTSTGSKDGDYSSFSKNLDTPSYLP
ALASYMFNNDLINKLDSSNTEQMQNVRTYTIGFSKGAEDAAPLLAETAKRGGGLYFAAQN
SLELQNALNDALSNILNIDSSFTSPSIASNNFDRTQTFDAAYYAMFLPGKGPRWSGNLKK
LKVTGDGTLVDSQGNAAIADNGNIKDTACTIWSDCASQKDGNKVEVGGASAQIKSQANRT
ILSNLGGASSLSPLTLSNAQNAAGGDQALATFMRTSIDEVANTLDWLKGIDVDDDNKNGS
TTDKRNDVMGDPLHSKPLALNFGSKTATDIRIILGTNQGVLHMFKDGGEAVSETWGFIPY
ELLPNLFELRTNDPSGVHTVYGMDSSPVAYTETDSTGKVNKAWVFAGMRRGGSSYYALNV
TNPDNPSLMWTINPSTDGFADLGQTWSEPIVTKIVGYEKPVLIFGGGYDVSFDATPSSSP
SGRAVYIVDAEKGILIHSFGGSASGATVLPDIQGSIPNSVAVLDSNNDGYTDRIYASDVT
GNIWRMDLPSASIDTWTAFKFASLGGTNSDNRRFFAEPVVAQTMFTNLSEVSVTTGGETV
TTKTSQNVPYDAVAVGSGMRPSPSSTSVNDMFFMLQDRNVVTKSFTGSNIPSAITINNLY
DVSSSAPTSETDNISFSTKLGWFYDFSGVGEKSLTAALIIDGKVYFTSYSPPADSVADNV
CVVSGSGKLYAFDLHKGTRTFSQLYYELGERVPDTPQIVIPAPETGKDPYIYIIGVGKGD
KNENGEYSGTINVASGLGVNKIYYHIDE