Protein Info for Shewana3_2981 in Shewanella sp. ANA-3

Annotation: HPP family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 35 to 53 (19 residues), see Phobius details amino acids 73 to 104 (32 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details PF04982: HPP" amino acids 39 to 155 (117 residues), 125 bits, see alignment E=9.8e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2981)

Predicted SEED Role

"HPP domain-containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZI7 at UniProt or InterPro

Protein Sequence (159 amino acids)

>Shewana3_2981 HPP family protein (RefSeq) (Shewanella sp. ANA-3)
MKVISQQQLKPALLAGIGAMLCISALASLEQMSSQLLWLMAPFGATMVILFALPDSPLAQ
PRNIVCGHLLTSLMGLIILHSVGVSPLTLGLAVGAGIALMMLTHTVHPPAGANPLVIMLT
AQGWDFLYSPVASGLVLILSFGWLYHNLLCRRPYPQKWF