Protein Info for Shewana3_2915 in Shewanella sp. ANA-3

Annotation: phage integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 PF00589: Phage_integrase" amino acids 224 to 436 (213 residues), 29.4 bits, see alignment E=3.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2915)

Predicted SEED Role

"Phage integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZC2 at UniProt or InterPro

Protein Sequence (492 amino acids)

>Shewana3_2915 phage integrase family protein (RefSeq) (Shewanella sp. ANA-3)
MCTRKVSLSSVKVRATIVEDNAGIKSQLPILLTEQGELSTVTDYLLKLEADGVSNSVMNG
FLQAVSLLLDYMEANRGLFDDPKLLFQTFSKRLYTGTIGEDGLDPSGLYWVPSSTSNVNK
HIHRLTAFTDWLANKHGTASMNPLRDATPHEQRLNYAAWYRKNQNDFLGHIEDKTVNKTI
RKARTIKGRTPLTKTEDDAIAFPEKHWEDFYLNGIGGASDPRVALRDKLILLLMHGGGLR
ESEALTLWVTDVFEDPYNPDSAIVRIYNEVDGKAPNDPEVRSKNQNRETYLKEKYARIPR
QRMKGTAHLGWKNRVVDHKDNYIQVQWFPTDYGKVFMSLWKNYQKYRASIDCHHPYAFIS
FHHSAFGNPYTINAFHDNYANGLKRIGLEPSKAEGKDPHGHRHNYGRRLERSGLNPLVIR
RCMHHKSLDSQIPYTGKGQQEISDELTQATLQLANPESKVKALDWKALVGHGFDDIDPQG
YFTGKHPKLRGK