Protein Info for Shewana3_2913 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 84 to 109 (26 residues), see Phobius details amino acids 130 to 157 (28 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 232 to 249 (18 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2913)

Predicted SEED Role

"Membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZC0 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Shewana3_2913 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MPGEALSLKKGLIGGVLLSLIMTAGVLLVPLLSYYTLAAVLLVALLLYFLMLISVTGKGV
LAMLLTMAITLIPIAGLIEQAVALAIAQLIAIGVLIGTLVNGIAHALFPPAPVTAAEKPI
LLPPEHPKRLALRATIIVIPVWLLALSDPAFYIPAVMKTVMLAQQSTLLNAKQAGRELVL
STLMGALLAFALWMGLSIWPSLLMLVLMLGLMTMWLTRRLIQLVPTGFPPSFWSNSWITA
LILFGPAIADSANGKDVWLAAAMRCSLYLLVAGYGWLCFIALEQKWPAGRPASEAPVGE