Protein Info for Shewana3_2836 in Shewanella sp. ANA-3

Annotation: SpoOM family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 246 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF07070: Spo0M" amino acids 2 to 217 (216 residues), 226.4 bits, see alignment E=1.6e-71

Best Hits

KEGG orthology group: K06377, sporulation-control protein (inferred from 100% identity to shm:Shewmr7_2729)

Predicted SEED Role

"putative SpoOM-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZ44 at UniProt or InterPro

Protein Sequence (246 amino acids)

>Shewana3_2836 SpoOM family protein (RefSeq) (Shewanella sp. ANA-3)
MFKKLLASVGIGGATVDTQLIDNRLLPGQIFHATIVVKGGNVPQQISGLDLALMTKVKVS
SDNGDYFKNHRLASWRLTESFEIQAGEIREIPFSGKLHPETPFTQLPVRNNQSQVWLQTG
VDIDTALDPSDIDALVIMPTAIAEHVLKAMDALGFVLVKADVEQGFLNTRAFRSTSGCYQ
ELEFKPRNMGFNRLREIEVSLVCDAEQTHVLLELDRAFRGDGYLYFSLPNNATLSQVQEI
FRANLA