Protein Info for Shewana3_2795 in Shewanella sp. ANA-3

Annotation: SNF2-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 PF04434: SWIM" amino acids 76 to 99 (24 residues), 21 bits, see alignment (E = 5.7e-08) PF04851: ResIII" amino acids 617 to 775 (159 residues), 29.8 bits, see alignment E=1.6e-10 PF00176: SNF2-rel_dom" amino acids 621 to 904 (284 residues), 233.6 bits, see alignment E=8e-73 PF00270: DEAD" amino acids 644 to 775 (132 residues), 26.7 bits, see alignment E=1.3e-09 PF00271: Helicase_C" amino acids 918 to 1027 (110 residues), 82 bits, see alignment E=1.1e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2795)

Predicted SEED Role

"COG0553: Superfamily II DNA/RNA helicases, SNF2 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KZ03 at UniProt or InterPro

Protein Sequence (1082 amino acids)

>Shewana3_2795 SNF2-related protein (RefSeq) (Shewanella sp. ANA-3)
MNRLSPQEPIQLTQTAIESLFTPPTLMRARDYVMQGRVLSAKANADFRHIEGTVTGTETT
PYRQDIRLVSVNHKLVMNGFCSCPASGNCKHMAAVLYSLLTDKTVEDQRIAQWLHLLDEA
DDPNMNDVESLYDDRVLYILSKDDNGVFIELRRGKLGKKGGYNKGTKIALSDVQYYMPAW
IGAEDVLILNLIMSTRRHGASRLYLKAQLGAVAIEKMLATERCFWEESRLALTAGEAITP
QFLWQDIDSEHKQMRLVLPERDNWELVPTEPPYYIELDYFHIGLIDTDISVDKLRLLSQM
PPVPSTQVELVSHRLIKHFSARTVPPPSAIDFVELRDKLQLRLTLKAIPAGTMPLGSTQP
SALDTRIAQPYLALEFVYGDLVLSGNAAKEALTLVTQGGTTYQINRTLEEELQAVSKLQT
LGFSRFSLEGAANGASLWSLGNLPDAIREWLAFIDEEVPKLQTQGIEVRFAPEFSLKVVD
TPLTVELDDSQEGWFSLSLHADINGQRLPMLPLVATWLKQHGEPADDAELLLPSPSGEWL
KIKASVIKPLMSIIQELFEQHRGQSIALPKYRAHLLNELAESEISLLNGERVRQLATKLA
EFNGVVAVSAPTGLNAQLRAYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQ
QEAKSVGQPRLPSLIICPTSLVGNWAKEAAKFAPSLTLAVIHGAQRGPLLSRLSEFDVVV
TTYPLMVRDYDYYQAQPFEHIVLDEAQQIKNAQAKVSQQIKALQAPFRLCLTGTPLENHL
GELKSLMDFCLPGLLGTTAYFNKAFRYRIERYGDSEQAKVLSQRIAPFVLRRTKAEVVTE
LPPKTEILQTLELEKDQRNLYESIRLSMEKKIRELFATQGVAGSHIEFLDALLKLRQACC
DPRLVKLEQAQKVKNNAKLNWLNQNLPEMVQEGRKILIFSQFTSMLLLIEELLQSLNIDY
SKLTGQTRLRQGQIDKFQEGDTPVFLISLKAGGTGLNLTAADTVIHYDPWWNPAAEKQAT
DRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQHKQGLADSILEGKGKGAWQGSADELLSL
FH