Protein Info for Shewana3_2758 in Shewanella sp. ANA-3

Annotation: FAD linked oxidase domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 PF13385: Laminin_G_3" amino acids 43 to 173 (131 residues), 40 bits, see alignment E=6.5e-14 PF01565: FAD_binding_4" amino acids 390 to 524 (135 residues), 100.6 bits, see alignment E=9.6e-33 PF08031: BBE" amino acids 852 to 895 (44 residues), 37.4 bits, see alignment 3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2758)

Predicted SEED Role

"probable oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KYW6 at UniProt or InterPro

Protein Sequence (896 amino acids)

>Shewana3_2758 FAD linked oxidase domain-containing protein (RefSeq) (Shewanella sp. ANA-3)
MKTPNTPHNTSDTSTNSVAQVQGQETAASMNSLSLTPFSLSQTLDVFTFQAWVNTQQGGT
VFQYCDQANTPCFMVQITPLGHIDIRVNSQLLQIDTISTLGGLNDGYWHLLSITYQYHEL
SCFIDGDQIHLQQHTTPLTDEAKLKTEKQTTATFDGEIVNINLIEACLTDTEILDCYLHP
QQQAALIDSNLYIYPKQHSKQTLNLMPAQLARQEVMLIIFNDTEYNFSKQNLNSNNFNKQ
LPSIIPAHERCAYMIESSSDNWPHFIYKANYQAKESTDIKLSFDILKSLTPHRSQIDLQL
SNELEFDCFISQSTSNRLTAEIRISENVVTRQAKHFMRFINEVRSHIASDNIITDGQYYA
EQDFWVSTGQQMLAYENACQLFNRRLQKRPLAIIKCRTSQEVKLVYKTAVDYHLAISVRS
SGHDHEGESGETNSIVIDLSLMNSIELDPISGIVAVGPGCTMQALTSYLAQKGLMLPHST
SASHALAGFIMGGGWGPWCRKYGMCCESLVQAEIVLGVGETQVVSAANKPELLWALKGGG
GLSYGIVTRFFIQTFALPPSLLKFELEWNPYQQDSQQLRETTPTLRLLERWEQIILADNL
PCLLGTNLKIQAKPTVLPGVKPPLNTGVQDPQEAKHNCIMYGYWEGNPASLAHFIKTQFS
EVGLKPKRVQMAAMGGLSQSYGDELMESWNREAIRDLQPVLNHRMAELINDTDIQLYENQ
RQHSQDLLKPAPHRVTSRLAHAQGLKQGHIALIDSLTSSQLIDGNRQLGLFTYVTLSAIA
GDFYRTLGEVQKSQSAFPYKEQAYIIQYQAWWNSELQEQALMQVNSVYPRVNKALDWIDT
CRDACIANSSGAFISFKDNTIPTARYFGQNYQMLQQVKASYCQDPLNHFRSRKSIV