Protein Info for Shewana3_2652 in Shewanella sp. ANA-3

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 26 to 50 (25 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 177 (17 residues), see Phobius details amino acids 215 to 241 (27 residues), see Phobius details amino acids 261 to 284 (24 residues), see Phobius details PF12911: OppC_N" amino acids 14 to 66 (53 residues), 54.3 bits, see alignment 9.8e-19 PF00528: BPD_transp_1" amino acids 113 to 293 (181 residues), 82 bits, see alignment E=4.8e-27

Best Hits

Swiss-Prot: 50% identical to SAPC_SHIFL: Peptide transport system permease protein SapC (sapC) from Shigella flexneri

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to shm:Shewmr7_2554)

MetaCyc: 50% identical to putrescine ABC exporter membrane protein SapC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-328 [EC: 7.6.2.16]

Predicted SEED Role

"Peptide transport system permease protein sapC (TC 3.A.1.5.5)" in subsystem ABC transporter peptide (TC 3.A.1.5.5) (TC 3.A.1.5.5)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.16

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KYL0 at UniProt or InterPro

Protein Sequence (296 amino acids)

>Shewana3_2652 binding-protein-dependent transport systems inner membrane component (RefSeq) (Shewanella sp. ANA-3)
MPPIKIYQEDQIASPMMRVWQNFSANPFALAGLWTIAFLLLLTLFGPMIAPFSPEAQDPR
ALLLPPSWDPSGTVAHFLGTDDLGRDIFSRLLHGAHLTFGMALMIVGTALFMGFIIGSLS
GMMRGLKSSILGHLLDALLSIPSLLMAILVVAVMGPGLENVFWAVGIALTPQFVRSIHQS
VHEELQKEYVTAARLDGANSLQIFWYVIMPNVWEVVIIQTTLAISAAILDIAALGFLSLG
AQAPSPEWGAMVAQGMDNLLTAPWTVTIPGLAILFSVLAINLVGDGLRSALAPIRN