Protein Info for Shewana3_2495 in Shewanella sp. ANA-3

Annotation: DoxX family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 165 to 185 (21 residues), see Phobius details PF07681: DoxX" amino acids 22 to 107 (86 residues), 81.7 bits, see alignment E=2.5e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2495)

Predicted SEED Role

"FIG01057559: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KY55 at UniProt or InterPro

Protein Sequence (197 amino acids)

>Shewana3_2495 DoxX family protein (RefSeq) (Shewanella sp. ANA-3)
MSLVNLYQKFLNASRYGEGLAPLALRLYLAPVLMQAGYNKLAHFEDTVAWFANPDWGLGL
PMPTLMAALAAGTEFFGAFLLLVGLATRLISIPLMITMLVAAFTVHWPNGWLAIADGSSW
LANERVLEAGDKLDKAKSLLQEYGNYDWLTSSGNLVVLNNGIEFAATYFIMLLALFSLGG
GRYISLDYFIAKRYNVK