Protein Info for Shewana3_2446 in Shewanella sp. ANA-3

Annotation: DNA polymerase III, subunits gamma and tau (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 TIGR02397: DNA polymerase III, subunit gamma and tau" amino acids 3 to 354 (352 residues), 441.5 bits, see alignment E=1.3e-136 PF13177: DNA_pol3_delta2" amino acids 21 to 178 (158 residues), 147.6 bits, see alignment E=1.2e-46 PF13401: AAA_22" amino acids 41 to 157 (117 residues), 28.2 bits, see alignment E=7.7e-10 PF00004: AAA" amino acids 42 to 171 (130 residues), 41.1 bits, see alignment E=8.4e-14 PF22608: DNAX_ATPase_lid" amino acids 183 to 230 (48 residues), 87.7 bits, see alignment 1.2e-28 PF12169: DNA_pol3_gamma3" amino acids 232 to 366 (135 residues), 129.3 bits, see alignment E=3.4e-41 PF12170: DNA_pol3_tau_5" amino acids 901 to 1018 (118 residues), 104.4 bits, see alignment E=2.1e-33

Best Hits

KEGG orthology group: K02343, DNA polymerase III subunit gamma/tau [EC: 2.7.7.7] (inferred from 100% identity to shn:Shewana3_2446)

Predicted SEED Role

"DNA polymerase III subunits gamma and tau (EC 2.7.7.7)" in subsystem DNA-replication (EC 2.7.7.7)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.7

Use Curated BLAST to search for 2.7.7.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KY06 at UniProt or InterPro

Protein Sequence (1040 amino acids)

>Shewana3_2446 DNA polymerase III, subunits gamma and tau (RefSeq) (Shewanella sp. ANA-3)
MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAK
GLNCEKGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRF
KVYLIDEVHMLSRSSFNALLKTLEEPPKHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ
QEIGTQLQHILTQEQLPFEHEALTLLAKAANGSMRDALSLTDQAIAFGGGTVMLNQVQSM
LGSIDEQHVLRLLKALTDADIGVLMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPA
AAQQSLYSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPE
KPVKRWQVEDAAKVSLPAQQPTSTTPASNMPVVEQAVNQAVAEKKTPLTAERDSQTLPQA
AISEPMAKSENTTASQQALSAEDMLAVDDAIDDEAELNAALIAEQQVILSQAHSQGFGAN
AETVSRTEALSTPEAKVDSSAESNSVSMPASNIDAEHNQAATVDTASVDQGPSPATLTEP
VALSLDDIEEKTQASVNENADAVAPDEYSAEDYGQYNYAAAPLDAYQDDYSQFMAEEQGG
FSGMEESSFNRDSAQSIDHRDVVHKSAADPKSQSFVDNSASTASQASTPPASTTVSLEDD
DILSAVLAARDSLLSDLDALSTKEGDGKKPAAEVKLKTPSQNAHTAPVSHATSQNTPSVD
ASIKPQVANNASDNEFELPFDDDFEAELHLESQSNVTPTPPLDPNDRPPWEEAPVAAMDE
THAPAASVNLQTESPVAAQTAVEHLGAAPVAAQISPTDREATRVVQALEQAAGQESEPAT
QSPEPNTPQQPQAKELTQPKTQPQTQQPASVQSQSSETVQPTSSTALALAQSITGHPLDL
HWYKLMASLEIGGRVRQLAVNSICQVQANPLPLLLKPDQKHLAAPVAIEQLEQALTAALG
NPRQVEVVIGTDPARETPLEMRKRFHQELLQQARQSLMMDDNVQWLINRFGAELDQDTLL
YPPELLAQRSGLIPALPEPE