Protein Info for Shewana3_2310 in Shewanella sp. ANA-3

Annotation: glucose/galactose transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 248 to 273 (26 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details amino acids 339 to 362 (24 residues), see Phobius details amino acids 374 to 393 (20 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 372 (341 residues), 72.4 bits, see alignment E=1.7e-24 TIGR01272: glucose/galactose transporter WARNING" amino acids 106 to 416 (311 residues), 527.4 bits, see alignment E=7.1e-163

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 100% identity to shn:Shewana3_2310)

Predicted SEED Role

"Predicted glucose transporter in maltodextrin utilization gene cluster" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KXM0 at UniProt or InterPro

Protein Sequence (423 amino acids)

>Shewana3_2310 glucose/galactose transporter (RefSeq) (Shewanella sp. ANA-3)
MASSINTSSHTSSVSEAGNGNYRFALVSLTSLFFMWGFITCLNDILIPHLKAVFSLNYTQ
AMLIQFCFFGAYFLVSIPAGQLVKRLGYQKGIVTGLVIASIGCGLFYPAASFATYGLFLG
ALFVLASGITILQVAANPYVNALGSSETASSRLNLTQAFNALGTTVAPFFGSILILSVAA
SVSSELAQANAEAEVVKLPYLLLAAALAVLAIIFAKLDLPVIREHSQAAAEEVQTHLGKT
SALQSMHLVLGAVGIFVYVGAEVSIGSFLVNFLGEAHIVGMPEEQAAHYIAYYWGGAMVG
RFIGSAVMQKIPAGTVLAFNAFMAALLVLVAMTTSGSVAMWAILGVGLFNSIMFPTIFSL
ALRDLGPHTSQGSGILCLAIVGGAIVPLLQGVLADNLGIQLAFILPVVCYGFILFYGAKG
SKM