Protein Info for Shewana3_2246 in Shewanella sp. ANA-3

Annotation: exodeoxyribonuclease V, beta subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1263 transmembrane" amino acids 841 to 858 (18 residues), see Phobius details TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 10 to 1245 (1236 residues), 946 bits, see alignment E=2e-288 PF00580: UvrD-helicase" amino acids 16 to 454 (439 residues), 148.5 bits, see alignment E=6.6e-47 PF13361: UvrD_C" amino acids 460 to 849 (390 residues), 85.1 bits, see alignment E=1.3e-27

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KXF6 at UniProt or InterPro

Protein Sequence (1263 amino acids)

>Shewana3_2246 exodeoxyribonuclease V, beta subunit (RefSeq) (Shewanella sp. ANA-3)
MTKVSPALPLDSLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVV
TFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKS
LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLA
QIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKLAWPRGRDAL
LELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKG
GVLPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDLLTTL
AAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLDTQNSAAEPKPR
TDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGVNHLFA
QHSDPFISQSIPFDPVKTPASAAAKQLVEQAPNSAALRLKLLSEGETGLNKASARQTLAE
DTAAEITRLLTQAANGQCRTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSRD
SVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQRQRLLEQF
FELHQIWQKRGIMPALLSLANATQMVARLLHSPASTSTDQAEQDAAAQLEASNGERRLTD
FRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL
EYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAEDLR
LLYVALTRPVYLCYLYIANHSRMLKTGLKSQLHETAIGYLLGITDTDCDFSRLQNAAKAL
VAGLESSQPAISIEVVADDIEANKLQTGGANTHTLSARKVSRQYRTPWRVGSYSGLVKNA
PHAKATPGADDEVNAVLGTDTTNSAIDPIWPDHWWQEAADLQAQPLLNRFSFERGANAGS
FMHLVLELIDFTQAQIDLPRELPKAMLQYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQL
INPELCLAALAPQHTLVEMEFYLPLNRLKDTELNQLLGQYGYDTELQFDELQGMLKGFID
LTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAIGDHRYDLQYILYSLALHRYLAMRLP
NYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKALILALDALFQRSLETSTVNQQDTG
AMA