Protein Info for Shewana3_2182 in Shewanella sp. ANA-3

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 923 PF13111: pPIWI_RE_X" amino acids 32 to 397 (366 residues), 88.1 bits, see alignment E=7.2e-29 PF13032: RNaseH_pPIWI_RE" amino acids 647 to 920 (274 residues), 88.9 bits, see alignment E=5.2e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2182)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KX93 at UniProt or InterPro

Protein Sequence (923 amino acids)

>Shewana3_2182 hypothetical protein (RefSeq) (Shewanella sp. ANA-3)
MSTEKDIEQVNRQDQNIIQDLAMAFSPPVYPQVLNVQVTKAYWTPHAMALFADIYKLAEQ
HFIKQGAKDKNVTLPTSALRNLLHGSLPNLLSTNQYLGLGPHSLYRKDISLCGLFKQNIH
TVERFYACLDEWIEHDMTGFIERYDIPDHFREEMYGLADNTSLVTFTDDSLCLYPWISPH
VDTAPSLGERLTISANDIAVLLEGEVIFPELPPVRRVAGHGGNRAELVTLPINDHQEGRF
SLVCEISVETLPTDNTPIININFKKRRWLESLNNDYTRALTKSGYLIESEGTRAYHFCLE
KNQTNNWKWTPDSAFSALERRFDLTFTEALMFQEPSDQSDFIGIVHDYENEGDQKNEIGA
GVPEKDRKDAFDLISQILSKFGFTPFSAFERVKSPIKAFSNVTYMSKLVKDKPTDIKLEA
ADSLYLGQPLPPSLFEYDDIDALTAGTKVYLPDLIQGYLSDENVTKHVKSQTLFLVSQSA
AEGEVLKRIAYTLFGDCLTIKSVSLPELVHGPRVDLPSSEVKNKHTRKSARKKQWEGFVK
SLSEDSMSSICLIQAPMFYETSSGPKPDDEVNKPAAKLAFSSEQGFPVQYLLPPDTRSSS
TTKLEKYIMQAQQALLDLIFGHLGKLPNLSKRTSHYHSDEKAPKYLYGINMFTATTETRA
SKAEIIVASRVCIESGLTEIKIAHSTAQNVITDWMPFRNAIQYLTKRSEATLSLGKSWGD
KQHLVKEFCSSILDEAQKSTPHAYVYIKAEGCRSYWNWLGDSGVADFATHAKSKWSLLRI
VRVRDQAPKLLQHKIVDGHDKPTTTPSLFKLHTTDLPVYWSLGEPIQQYTRGLSCYRTLT
VSQANPKTKEKVVKTFSPDIKQAMRPNATEFTLISSLPEDEPDTISQFSASLRRGLMPAR
LETWVKSPSPIFVMNKLEEYLKL