Protein Info for Shewana3_2081 in Shewanella sp. ANA-3

Annotation: sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 81 to 98 (18 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 152 to 173 (22 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 266 to 287 (22 residues), see Phobius details amino acids 296 to 315 (20 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 363 to 389 (27 residues), see Phobius details amino acids 402 to 426 (25 residues), see Phobius details TIGR00792: sugar (Glycoside-Pentoside-Hexuronide) transporter" amino acids 11 to 442 (432 residues), 359.8 bits, see alignment E=8.8e-112 PF13347: MFS_2" amino acids 13 to 432 (420 residues), 371 bits, see alignment E=6.4e-115 PF07690: MFS_1" amino acids 26 to 375 (350 residues), 57 bits, see alignment E=1.6e-19

Best Hits

KEGG orthology group: K03292, glycoside/pentoside/hexuronide:cation symporter, GPH family (inferred from 100% identity to shn:Shewana3_2081)

Predicted SEED Role

"Possible GPH family transporter (TC 2.A.2) for arabinosides" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWZ2 at UniProt or InterPro

Protein Sequence (481 amino acids)

>Shewana3_2081 sugar (glycoside-Pentoside-hexuronide) transporter (RefSeq) (Shewanella sp. ANA-3)
MSYHKLSVIEKIGYGSGDMAVNVVISSMMLIITFFYTDIFGLKPADVGILFLLVRLIDAI
TDPLMGIINDKVTTRWGRYRPYFLFMAIPFGISVFLTFSTPDWDYNAKLIWAYSTYILVT
IIFTTVTIPYISIISVITDDPKERLSANGYRLFFAKIAAFLVTIIVPILASAWGGENIAA
GYQKAMGVMALMATLLFLFCFFTTTERVAYKVETKPVGMQLRLLFKNDQWLVLVAICVIG
TIGYVIRGSVAAYYATYYLGGDAKMLSAFLSTGVGAAILAMVASTWITKRYCKLKLFRYS
QIVVGILSAIMFFAVQPGDIVLAFVLYFAISFVVDLHAPVFWSVISESVDYGTVKTGHRV
SGLAFGGISFAQKAGMGAAGFVVGMLLTYFNYQPGETQSEFALTGISLMLTVIPGAFHAL
MGLLMFKYKISDRVYEEIKQALPEQAHVSQTDAKQTSKAIASDTVTAETVTPKTAAPQVS
A