Protein Info for Shewana3_2020 in Shewanella sp. ANA-3

Annotation: phage integrase family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1037 transmembrane" amino acids 380 to 397 (18 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details amino acids 515 to 532 (18 residues), see Phobius details amino acids 1019 to 1033 (15 residues), see Phobius details PF00589: Phage_integrase" amino acids 504 to 652 (149 residues), 30.7 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to shn:Shewana3_2020)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0KWT2 at UniProt or InterPro

Protein Sequence (1037 amino acids)

>Shewana3_2020 phage integrase family protein (RefSeq) (Shewanella sp. ANA-3)
MVEVKISSFINDLIIKDERHPLYQETLVAYLAKNCHTICDESKGVDTKKIFYSLYKNLLG
HLKNHFLLSETNFIQEELESLISHLKPDVIGKQTQLLILQALLNYAKKQFNFDSPNIPVI
VTLKRDKPILSPVELIKLPIVEQLNTIIDSELNVPSRMLTVDAKLGRTALLVYWTVGLSK
TEELISILEFPQNIFYVGGLCYWQSEKRYTYSTRFILSDVAVVALQQWNVLNVNKSFKVM
DLVVKYLNFVSDFDWSALSILKLRTLRKIDNVLRYGPVQYQMYILPRVSQALPEHAFCRL
LTDKACRNLEPRILEPSSDNLILSKPWKMINAGDTPFIDIKIILKNLDKLFERLLKFRLE
NNVREKCIKFLKNTIKKPEIAAVPYFWLLCSWLYSLLKHGGTSKSRLKLSTIIDYVKSLS
KPFLTVFSTCNIGLLSGEDWVSKLNDSAELFSSAQRKKYVYYFAQFLIDNRLVRDLCLSD
IDIIGSSSQVDANMISPTHIDEILNYLTQHFNDGLVYHYAYFLLCFCFFSGLRRNEAAKL
TWSDFSFSILFPSKHEFDYVKLSVRPNQHRTLKTSSARREIPLDAFWPKIAIEKLRKKYQ
IHHKMKQSKNALLFDNQKVANQAYDLITDLMRHYTHDYSLRVHHLRHSFANWSWCRLNPH
IIEIGKIQLKLFNHEIFSAEYLSRLQNRLCYSNNTRKKMFILSHLLGHKDVYSTLNSYLH
LKDVLHYLELQPRFTLTKYFCSECIGRSTLMEQEQELSLAERIQYYTKDTETKLSIKPAP
LISSLKIPTLANFVKEIHPTIKVSSLTWAKALAALKFCSIVDSSHTFNVPVEQLQQILTN
AEQVHNNYPRIGKPLPLIPNFPRLIHSSDSNNTNSYLAKSGKVFAYLCNKFDKSIEAESL
TLANVRLSMSILKYAVPGKGYALRCPESNVSRMFVRFCQLLGLKDRHLRFKYHRADLTLE
ASNRIEDRWIKTIVDYGFSEKNFTIASESEGRFLGKHDGNGFLEILLVNNAYKRVQRHQS
LFSFLHLILIFSYNEKK